PlantSME Plant secondary metabolism enzyme database

Panicum virgatum (panicum_virgatum)

Imported from atlas release summary for Panicum virgatum.

5617
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1471 20 BAHD (546) View species results
Alkaloid pathway 1354 25 7DLGT (243) View species results
Phenylpropanoid pathway 1185 11 POD (599) View species results
Flavonoid pathway 712 13 UFGT (422) View species results
Rosmarinic acid pathway 466 7 C4H (205) View species results
Steroid pathway 429 12 CAS (177) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 994 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMT
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Gene Pathway Family Confidence Status
Pvir01KG0013780.1 Alkaloid PMT medium borderline
Pvir01KG0042480.2 Alkaloid PMT medium pass
Pvir01KG0042480.3 Alkaloid PMT low borderline
Pvir01NG0012440.1 Alkaloid PMT medium borderline
Pvir01NG0012440.2 Alkaloid PMT medium borderline
Pvir01NG0012440.3 Alkaloid PMT medium borderline
Pvir01NG0012440.4 Alkaloid PMT medium borderline
Pvir01NG0041140.1 Alkaloid PMT medium pass
Pvir02KG0006490.1 Alkaloid PMT low borderline
Pvir02KG0014240.1 Alkaloid PMT medium borderline
Pvir02KG0014240.2 Alkaloid PMT medium borderline
Pvir02KG0014750.1 Alkaloid PMT medium pass
Pvir02KG0020420.1 Alkaloid PMT medium pass
Pvir02KG0020460.1 Alkaloid PMT medium pass
Pvir02KG0028300.1 Alkaloid PMT medium pass
Pvir02KG0028300.2 Alkaloid PMT medium pass
Pvir02KG0028300.3 Alkaloid PMT medium pass
Pvir02KG0028300.4 Alkaloid PMT medium pass
Pvir02NG0012210.1 Alkaloid PMT medium borderline
Pvir02NG0017000.1 Alkaloid PMT low borderline
Pvir02NG0017090.1 Alkaloid PMT medium pass
Pvir02NG0017130.1 Alkaloid PMT medium pass
Pvir02NG0025510.1 Alkaloid PMT medium pass
Pvir02NG0025510.2 Alkaloid PMT medium pass
Pvir03KG0005190.1 Alkaloid PMT low borderline
Pvir03KG0011620.1 Alkaloid PMT medium pass
Pvir03KG0014600.1 Alkaloid PMT low borderline
Pvir03KG0014600.2 Alkaloid PMT medium pass
Pvir03KG0014600.3 Alkaloid PMT medium pass
Pvir03KG0015000.1 Alkaloid PMT medium pass
Pvir03KG0025520.1 Alkaloid PMT low borderline
Pvir03KG0039340.1 Alkaloid PMT low borderline
Pvir03KG0039350.1 Alkaloid PMT medium pass
Pvir03KG0039380.1 Alkaloid PMT medium pass
Pvir03KG0039380.2 Alkaloid PMT medium pass
Pvir03KG0039390.1 Alkaloid PMT medium pass
Pvir03KG0039390.2 Alkaloid PMT medium pass
Pvir03KG0047170.1 Alkaloid PMT medium pass
Pvir03KG0047510.1 Alkaloid PMT medium pass
Pvir03NG0004120.1 Alkaloid PMT low borderline
Pvir03NG0006230.1 Alkaloid PMT medium pass
Pvir03NG0010480.1 Alkaloid PMT medium pass
Pvir03NG0010480.2 Alkaloid PMT medium pass
Pvir03NG0010480.3 Alkaloid PMT medium pass
Pvir03NG0013280.1 Alkaloid PMT medium pass
Pvir03NG0013280.2 Alkaloid PMT medium pass
Pvir03NG0013690.1 Alkaloid PMT medium pass
Pvir03NG0035900.1 Alkaloid PMT medium pass
Pvir03NG0036130.1 Alkaloid PMT medium pass
Pvir03NG0036130.2 Alkaloid PMT medium pass