PlantSME Plant secondary metabolism enzyme database

Panicum virgatum (panicum_virgatum)

Imported from atlas release summary for Panicum virgatum.

5617
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 26.19% Alkaloid pathway 24.11% Phenylpropanoid pathway 21.1% Flavonoid pathway 12.68% Rosmarinic acid pathway 8.3% Steroid pathway 7.64%
Family Distribution
BAHD 5.77% C3'H/CYP98A 5.35% C4H 5.27% POD 4.83% 4CL 3.98% UGT 3.69% 7DLGT 3.58% UFGT 3.51%
Other Families 64.02%
More Families (98)
IFS 409 3.2% T3O 408 3.19% NMT 395 3.09% CYP76 350 2.74% DWF4/CYP90B1 295 2.31% F3'H/CYP75B 264 2.07% STR 260 2.03% F3H 256 2.0% CAS 227 1.78% CYP71 224 1.75% CAD 221 1.73% SMT1/SMT2/SMT3 206 1.61% BR6OX2/CYP85A2 204 1.6% TPS 197 1.54% GES 184 1.44% SGD 167 1.31% IFR 149 1.17% CSE 149 1.17% PMT 143 1.12% PYKS 139 1.09% LAC 133 1.04% HCT 133 1.04% SLS 130 1.02% H6H 130 1.02% ANR 124 0.97% RAS 124 0.97% TRI/TRII 121 0.95% CCR 118 0.92% PAL 117 0.92% CODM/T6ODM 104 0.81% COMT 98 0.77% GS 87 0.68% NCS 86 0.67% CYP90D1 81 0.63% 16OMT 78 0.61% CNMT 76 0.59% CHS 71 0.56% CPD/CYP90A1 71 0.56% G8O/G8H 69 0.54% T16H 69 0.54% COR 66 0.52% IO 57 0.45% TAT 57 0.45% FNS 54 0.42% BR6OX1/CYP85A1 54 0.42% F3'5'H/CYP75A 53 0.41% BBE 52 0.41% CYP51G1 52 0.41% 8HGO 51 0.4% DFR 51 0.4% SQS/FDFT1 44 0.34% F5H/CYP84A 42 0.33% FPPS 40 0.31% LAMT 39 0.31% SMO1/SMO2 39 0.31% DWF1 37 0.29% MPO 31 0.24% CPR 31 0.24% 7DLH 29 0.23% GGPPS 27 0.21% ANS/LDOX 25 0.2% CCoAOMT 25 0.2% MVD 25 0.2% HPPR 23 0.18% AACT 21 0.16% DXS 21 0.16% TYDC_DDC 20 0.16% HMGS 20 0.16% MVK 15 0.12% MCT/IspD 13 0.1% CYP719 12 0.09% ISY 12 0.09% ROT3/CYP90C1 12 0.09% DET2 12 0.09% CYP80B1 11 0.09% CHI 11 0.09% HMGR 11 0.09% CYP80F1 10 0.08% XMT_MXMT_DXMT 10 0.08% 6OMT_4OMT_SOMT 8 0.06% TDC 8 0.06% FLS 8 0.06% IDI 8 0.06% ODC 7 0.05% ADC 7 0.05% HDS/IspG 7 0.05% DXR 6 0.05% FK 5 0.04% HYD1 5 0.04% CMK/IspE 5 0.04% DWF5 4 0.03% SQE 4 0.03% MDS/IspF 4 0.03% PMK 4 0.03% GPPS 3 0.02% CPI1 2 0.02% DWF7 2 0.02% HDR/IspH 2 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 1471 20 BAHD (546) View species results
Alkaloid pathway 1354 25 7DLGT (243) View species results
Phenylpropanoid pathway 1185 11 POD (599) View species results
Flavonoid pathway 712 13 UFGT (422) View species results
Rosmarinic acid pathway 466 7 C4H (205) View species results
Steroid pathway 429 12 CAS (177) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 4263 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 994 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 6OMT_4OMT_SOMT
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Gene Pathway Family Confidence Status Best Target
Pvir01KG0009370.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00002__sp_D3KY99_OMT2_CARIP
Pvir07NG0009710.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00002__sp_D3KY99_OMT2_CARIP
Pvir08KG0019190.2 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00001__sp_D3KY98_OMT1_CARIP
Pvir08KG0019250.2 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Pvir08KG0026030.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00002__sp_D3KY99_OMT2_CARIP
Pvir08KG0026050.1 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00002__sp_D3KY99_OMT2_CARIP
Pvir08NG0016430.2 Alkaloid 6OMT_4OMT_SOMT medium pass 6OMT_4OMT_SOMT__00003__sp_Q5C9L7_6OMT_THLFG
Pvir08NG0021840.3 Alkaloid 6OMT_4OMT_SOMT medium borderline 6OMT_4OMT_SOMT__00001__sp_D3KY98_OMT1_CARIP