PlantSME Plant secondary metabolism enzyme database

Phaseolus vulgaris (phaseolus_vulgaris)

Imported from atlas release summary for Phaseolus vulgaris.

2318
Candidate Protein Records
2008
Pathway-Level Records
4679
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 572 20 BAHD (235) View species results
Alkaloid pathway 473 20 7DLGT (83) View species results
Phenylpropanoid pathway 419 11 POD (185) View species results
Flavonoid pathway 279 10 UFGT (189) View species results
Rosmarinic acid pathway 138 7 C4H (60) View species results
Steroid pathway 127 11 CAS (63) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1615 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 366 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Protein/Isoform Record Pathway Family Confidence Status
PHvul03G0006210.1 Alkaloid GS low borderline
PHvul03G0029210.1 Alkaloid GS high pass
PHvul03G0029220.1 Alkaloid GS high pass
PHvul04G0001610.1 Alkaloid GS low borderline
PHvul04G0001620.1 Alkaloid GS low borderline
PHvul04G0012530.1 Alkaloid GS medium pass
PHvul05G0006930.1 Alkaloid GS low borderline
PHvul06G0019230.1 Alkaloid GS low borderline
PHvul06G0020190.1 Alkaloid GS high pass
PHvul06G0020190.2 Alkaloid GS high pass
PHvul06G0020190.3 Alkaloid GS high pass
PHvul06G0020190.4 Alkaloid GS high pass
PHvul07G0003950.1 Alkaloid GS high pass
PHvul08G0013340.1 Alkaloid GS low borderline
PHvul08G0013350.1 Alkaloid GS low borderline
PHvul08G0015520.1 Alkaloid GS low borderline
PHvul09G0004160.1 Alkaloid GS low borderline
PHvul09G0006640.1 Alkaloid GS low borderline
PHvul11G0000240.1 Alkaloid GS low borderline
PHvul11G0000250.1 Alkaloid GS low borderline
PHvul11G0021440.1 Alkaloid GS low borderline
PHvul11G0021450.1 Alkaloid GS low borderline
PHvulscaffold_300003230.1 Alkaloid GS low borderline
PHvul01G0005550.1 Alkaloid H6H low borderline
PHvul01G0005560.1 Alkaloid H6H low borderline
PHvul01G0012430.1 Alkaloid H6H low borderline
PHvul01G0012440.1 Alkaloid H6H low borderline
PHvul01G0018110.1 Alkaloid H6H medium borderline
PHvul02G0012010.1 Alkaloid H6H low borderline
PHvul02G0012010.2 Alkaloid H6H low borderline
PHvul02G0012020.1 Alkaloid H6H low borderline
PHvul02G0015000.1 Alkaloid H6H medium borderline
PHvul02G0032620.1 Alkaloid H6H medium borderline
PHvul02G0032620.2 Alkaloid H6H medium borderline
PHvul03G0008290.1 Alkaloid H6H medium borderline
PHvul03G0024450.1 Alkaloid H6H low borderline
PHvul03G0026660.1 Alkaloid H6H high pass
PHvul04G0004540.1 Alkaloid H6H medium borderline
PHvul04G0004540.2 Alkaloid H6H medium borderline
PHvul04G0004540.3 Alkaloid H6H medium borderline
PHvul04G0004540.4 Alkaloid H6H medium borderline
PHvul04G0005290.1 Alkaloid H6H low borderline
PHvul04G0005300.1 Alkaloid H6H low borderline
PHvul04G0012310.1 Alkaloid H6H medium borderline
PHvul04G0012320.2 Alkaloid H6H medium borderline
PHvul04G0012330.1 Alkaloid H6H high pass
PHvul04G0012340.2 Alkaloid H6H medium borderline
PHvul04G0012350.1 Alkaloid H6H high pass
PHvul05G0005790.1 Alkaloid H6H medium pass
PHvul05G0005820.1 Alkaloid H6H medium borderline