Polytrichastrum alpinum (polytrichastrum_alpinum)

This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.

Pathway Coverage

6 Pathways

Phenylpropanoid pathway 27.02% Terpenoid pathway 22.57% Alkaloid pathway 18.95% Rosmarinic acid pathway 13.67% Flavonoid pathway 12.85% Steroid pathway 4.94%

Family Distribution

607 Candidate Genes

C4H 8.4% C3'H/CYP98A 6.73% CYP76 5.12% BAHD 4.49% PAL 4.14% 4CL 3.97% POD 3.91% IFS 3.39%

Other Families 59.84%

More Families (97)

NMT 57 3.28% T3O 48 2.76% DWF4/CYP90B1 48 2.76% F3H 45 2.59% F3'H/CYP75B 42 2.42% STR 39 2.24% BR6OX2/CYP85A2 36 2.07% IFR 34 1.96% UGT 32 1.84% CODM/T6ODM 31 1.78% 7DLGT 28 1.61% PYKS 27 1.55% UFGT 27 1.55% GS 26 1.5% COMT 26 1.5% G8O/G8H 22 1.27% H6H 20 1.15% T16H 20 1.15% LAC 20 1.15% TRI/TRII 18 1.04% IO 17 0.98% CHS 17 0.98% CYP71 16 0.92% F3'5'H/CYP75A 14 0.81% HCT 14 0.81% SMT1/SMT2/SMT3 14 0.81% SGD 12 0.69% FNS 12 0.69% CPD/CYP90A1 12 0.69% 16OMT 11 0.63% RAS 11 0.63% BR6OX1/CYP85A1 11 0.63% SLS 10 0.58% CAD 10 0.58% CSE 10 0.58% 7DLH 9 0.52% CCR 9 0.52% CAS 8 0.46% BBE 7 0.4% CNMT 7 0.4% CYP90D1 7 0.4% AACT 7 0.4% DXS 7 0.4% NCS 6 0.35% COR 6 0.35% ANR 6 0.35% CPR 6 0.35% MPO 5 0.29% ANS/LDOX 5 0.29% DFR 5 0.29% SMO1/SMO2 5 0.29% 8HGO 4 0.23% 6OMT_4OMT_SOMT 4 0.23% GES 4 0.23% TAT 4 0.23% SQS/FDFT1 4 0.23% GGPPS 4 0.23% PMT 3 0.17% CYP719 3 0.17% CHI 3 0.17% F5H/CYP84A 3 0.17% DWF1 3 0.17% ROT3/CYP90C1 3 0.17% DET2 3 0.17% IDI 3 0.17% MVK 3 0.17% HMGR 3 0.17% ISY 2 0.12% LAMT 2 0.12% ADC 2 0.12% TDC 2 0.12% CYP80B1 2 0.12% ODC 2 0.12% FLS 2 0.12% CCoAOMT 2 0.12% HPPR 2 0.12% DWF5 2 0.12% MVD 2 0.12% FPPS 2 0.12% MDS/IspF 2 0.12% HMGS 2 0.12% TYDC_DDC 1 0.06% XMT_MXMT_DXMT 1 0.06% CYP51G1 1 0.06% FK 1 0.06% CPI1 1 0.06% SQE 1 0.06% DWF7 1 0.06% HYD1 1 0.06% HDR/IspH 1 0.06% GPPS 1 0.06% TPS 1 0.06% CMK/IspE 1 0.06% PMK 1 0.06% HDS/IspG 1 0.06% DXR 1 0.06% MCT/IspD 1 0.06%

Species Pathway Results

The links below show identification results for this species within each pathway, instead of opening the global pathway overview.

Pathway	Candidate Genes	Families	Top family	Results
Phenylpropanoid pathway	164	11	POD (61)	View species results
Terpenoid pathway	137	17	BAHD (50)	View species results
Alkaloid pathway	115	16	NMT (17)	View species results
Rosmarinic acid pathway	83	7	C4H (37)	View species results
Flavonoid pathway	78	7	UFGT (24)	View species results
Steroid pathway	30	12	CAS (8)	View species results

Broad Catalytic Groups

P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.

Catalytic group	Families	Candidate genes	Included families
P450/oxygenase	23	735	7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase	3	103	BAHD, HCT, RAS

Identification Result List

Search the public identification results for this species; click pathway or family legends above to narrow within this species.

Current family filter: BAHD

Gene	Pathway	Family	Confidence	Status	Best Target
Palpscaffold_60154030	Terpenoid	BAHD	low	borderline	BAHD__00023__sp_O22975_LPAAT_ARATH
Palpscaffold_60161220	Terpenoid	BAHD	medium	pass	BAHD__00082__sp_Q9LLY4_LPAT1_BRANA
Palpscaffold_60169820	Terpenoid	BAHD	medium	pass	BAHD__00077__sp_Q9FNA9_PDAT1_ARATH
Palpscaffold_60175030	Terpenoid	BAHD	low	borderline	BAHD__00068__sp_Q9C533_ZDHC1_ARATH
Palpscaffold_60175310	Terpenoid	BAHD	medium	pass	BAHD__00026__sp_O64811_SCP9_ARATH
Palpscaffold_60176580	Terpenoid	BAHD	medium	pass	BAHD__00056__sp_Q8L5Y5_ZDH17_ARATH
Palpscaffold_70180000	Terpenoid	BAHD	low	borderline	BAHD__00020__sp_K4D9Y4_ASAT3_SOLLC
Palpscaffold_70180810	Terpenoid	BAHD	medium	pass	BAHD__00017__sp_F4IDU4_MBOA1_ARATH
Palpscaffold_70183600	Terpenoid	BAHD	medium	pass	BAHD__00074__sp_Q9FFQ7_FACT_ARATH
Palpscaffold_70184010	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
Palpscaffold_70184370	Terpenoid	BAHD	medium	pass	BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH
Palpscaffold_70184430	Terpenoid	BAHD	low	borderline	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Palpscaffold_70184440	Terpenoid	BAHD	low	borderline	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Palpscaffold_70190910	Terpenoid	BAHD	medium	pass	BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE
Palpscaffold_70192470	Terpenoid	BAHD	low	borderline	BAHD__00060__sp_Q8VYP5_ZDH14_ARATH
Palpscaffold_70193250	Terpenoid	BAHD	low	borderline	BAHD__00026__sp_O64811_SCP9_ARATH
Palpscaffold_70195890	Terpenoid	BAHD	medium	pass	BAHD__00022__sp_K7PEY4_RAM2_MEDTR
Palpscaffold_70196470	Terpenoid	BAHD	medium	pass	BAHD__00016__sp_D4NUX0_HCT1_ACTRA
Palpscaffold_70198080	Terpenoid	BAHD	low	borderline	BAHD__00068__sp_Q9C533_ZDHC1_ARATH
Palpscaffold_70198220	Terpenoid	BAHD	low	borderline	BAHD__00018__sp_I1MRZ6_DAT32_SOYBN
Palpscaffold_70199490	Terpenoid	BAHD	medium	pass	BAHD__00063__sp_Q93VV0_ZDHC6_ARATH
Palpscaffold_70200480	Terpenoid	BAHD	low	borderline	BAHD__00047__sp_Q5KS41_WSD11_ARATH
Palpscaffold_70201210	Terpenoid	BAHD	medium	pass	BAHD__00047__sp_Q5KS41_WSD11_ARATH
Palpscaffold_70208000	Terpenoid	BAHD	low	borderline	BAHD__00006__sp_A0A2R6Q326_AT16_ACTCC
Palpscaffold_70213210	Terpenoid	BAHD	low	borderline	BAHD__00055__sp_Q8H780_SCP13_ARATH
Palpscaffold_70213480	Terpenoid	BAHD	low	borderline	BAHD__00025__sp_O64810_SCP10_ARATH
Palpscaffold_70215980	Terpenoid	BAHD	medium	pass	BAHD__00030__sp_O80816_GLC_ARATH
Palpscaffold_80222310	Terpenoid	BAHD	medium	pass	BAHD__00062__sp_Q93V61_LCAT3_ARATH