PlantSME Plant secondary metabolism enzyme database

Polytrichastrum alpinum (polytrichastrum_alpinum)

Imported from atlas release summary for Polytrichastrum alpinum.

607
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 27.02% Terpenoid pathway 22.57% Alkaloid pathway 18.95% Rosmarinic acid pathway 13.67% Flavonoid pathway 12.85% Steroid pathway 4.94%
Family Distribution
C4H 8.4% C3'H/CYP98A 6.73% CYP76 5.12% BAHD 4.49% PAL 4.14% 4CL 3.97% POD 3.91% IFS 3.39%
Other Families 59.84%
More Families (97)
NMT 57 3.28% T3O 48 2.76% DWF4/CYP90B1 48 2.76% F3H 45 2.59% F3'H/CYP75B 42 2.42% STR 39 2.24% BR6OX2/CYP85A2 36 2.07% IFR 34 1.96% UGT 32 1.84% CODM/T6ODM 31 1.78% 7DLGT 28 1.61% PYKS 27 1.55% UFGT 27 1.55% GS 26 1.5% COMT 26 1.5% G8O/G8H 22 1.27% H6H 20 1.15% T16H 20 1.15% LAC 20 1.15% TRI/TRII 18 1.04% IO 17 0.98% CHS 17 0.98% CYP71 16 0.92% F3'5'H/CYP75A 14 0.81% HCT 14 0.81% SMT1/SMT2/SMT3 14 0.81% SGD 12 0.69% FNS 12 0.69% CPD/CYP90A1 12 0.69% 16OMT 11 0.63% RAS 11 0.63% BR6OX1/CYP85A1 11 0.63% SLS 10 0.58% CAD 10 0.58% CSE 10 0.58% 7DLH 9 0.52% CCR 9 0.52% CAS 8 0.46% BBE 7 0.4% CNMT 7 0.4% CYP90D1 7 0.4% AACT 7 0.4% DXS 7 0.4% NCS 6 0.35% COR 6 0.35% ANR 6 0.35% CPR 6 0.35% MPO 5 0.29% ANS/LDOX 5 0.29% DFR 5 0.29% SMO1/SMO2 5 0.29% 8HGO 4 0.23% 6OMT_4OMT_SOMT 4 0.23% GES 4 0.23% TAT 4 0.23% SQS/FDFT1 4 0.23% GGPPS 4 0.23% PMT 3 0.17% CYP719 3 0.17% CHI 3 0.17% F5H/CYP84A 3 0.17% DWF1 3 0.17% ROT3/CYP90C1 3 0.17% DET2 3 0.17% IDI 3 0.17% MVK 3 0.17% HMGR 3 0.17% ISY 2 0.12% LAMT 2 0.12% ADC 2 0.12% TDC 2 0.12% CYP80B1 2 0.12% ODC 2 0.12% FLS 2 0.12% CCoAOMT 2 0.12% HPPR 2 0.12% DWF5 2 0.12% MVD 2 0.12% FPPS 2 0.12% MDS/IspF 2 0.12% HMGS 2 0.12% TYDC_DDC 1 0.06% XMT_MXMT_DXMT 1 0.06% CYP51G1 1 0.06% FK 1 0.06% CPI1 1 0.06% SQE 1 0.06% DWF7 1 0.06% HYD1 1 0.06% HDR/IspH 1 0.06% GPPS 1 0.06% TPS 1 0.06% CMK/IspE 1 0.06% PMK 1 0.06% HDS/IspG 1 0.06% DXR 1 0.06% MCT/IspD 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 164 11 POD (61) View species results
Terpenoid pathway 137 17 BAHD (50) View species results
Alkaloid pathway 115 16 NMT (17) View species results
Rosmarinic acid pathway 83 7 C4H (37) View species results
Flavonoid pathway 78 7 UFGT (24) View species results
Steroid pathway 30 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 735 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 103 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
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Gene Pathway Family Confidence Status Best Target
Palpscaffold_70194250 Alkaloid NMT low borderline NMT__00049__sp_Q93YF5_SUVH1_TOBAC
Palpscaffold_70196930 Alkaloid NMT low borderline NMT__00024__sp_P0CB22_ATX2_ARATH
Palpscaffold_70197220 Alkaloid NMT low borderline NMT__00028__sp_Q2LAE1_ASHH2_ARATH
Palpscaffold_70205810 Alkaloid NMT low borderline NMT__00068__sp_Q9XI84_RBCMT_ARATH
Palpscaffold_70213230 Alkaloid NMT low borderline NMT__00067__sp_Q9T0G7_SUVH9_ARATH
Palpscaffold_70214650 Alkaloid NMT medium borderline NMT__00053__sp_Q9C6B9_PEAM3_ARATH
Palpscaffold_70216900 Alkaloid NMT low borderline NMT__00017__sp_F4K1J4_ATXR7_ARATH