PlantSME Plant secondary metabolism enzyme database

Polytrichastrum alpinum (polytrichastrum_alpinum)

Imported from atlas release summary for Polytrichastrum alpinum.

607
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 164 11 POD (61) View species results
Terpenoid pathway 137 17 BAHD (50) View species results
Alkaloid pathway 115 16 NMT (17) View species results
Rosmarinic acid pathway 83 7 C4H (37) View species results
Flavonoid pathway 78 7 UFGT (24) View species results
Steroid pathway 30 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 735 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 103 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
Palpscaffold_10019440 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_10025230 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_10028160 Flavonoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Palpscaffold_10028170 Flavonoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_20042470 Flavonoid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_20042480 Flavonoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Palpscaffold_20042530 Flavonoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Palpscaffold_20042540 Flavonoid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Palpscaffold_20042560 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_20043610 Flavonoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_20043620 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Palpscaffold_20043630 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_30061380 Flavonoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_30065360 Flavonoid PAL low borderline PAL__00009__sp_Q9SS45_PAL4_ARATH
Palpscaffold_40082780 Flavonoid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_40082790 Flavonoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Palpscaffold_40082800 Flavonoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_40083730 Flavonoid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Palpscaffold_50133330 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Palpscaffold_50138140 Flavonoid PAL low borderline PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_60166470 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_60168550 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_60168560 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Palpscaffold_70194740 Flavonoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_10019440 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_10025230 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_10028160 Phenylpropanoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Palpscaffold_10028170 Phenylpropanoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_20042470 Phenylpropanoid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_20042480 Phenylpropanoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Palpscaffold_20042530 Phenylpropanoid PAL medium pass PAL__00002__sp_P35510_PAL1_ARATH
Palpscaffold_20042540 Phenylpropanoid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Palpscaffold_20042560 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_20043610 Phenylpropanoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_20043620 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
Palpscaffold_20043630 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_30061380 Phenylpropanoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_30065360 Phenylpropanoid PAL low borderline PAL__00009__sp_Q9SS45_PAL4_ARATH
Palpscaffold_40082780 Phenylpropanoid PAL medium pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_40082790 Phenylpropanoid PAL medium pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Palpscaffold_40082800 Phenylpropanoid PAL medium pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_40083730 Phenylpropanoid PAL medium pass PAL__00008__sp_Q8VXG7_PALY_MAIZE
Palpscaffold_50133330 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Palpscaffold_50138140 Phenylpropanoid PAL low borderline PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_60166470 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_60168550 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
Palpscaffold_60168560 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
Palpscaffold_70194740 Phenylpropanoid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_10019440 Rosmarinic Acid PAL high pass PAL__00001__sp_P24481_PAL1_PETCR
Palpscaffold_10025230 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH