Polytrichastrum alpinum (polytrichastrum_alpinum)
Imported from atlas release summary for Polytrichastrum alpinum.
607
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
607
Candidate Genes
C4H
8.4%
C3'H/CYP98A
6.73%
CYP76
5.12%
BAHD
4.49%
PAL
4.14%
4CL
3.97%
POD
3.91%
IFS
3.39%
Other Families
59.84%
More Families (97)
NMT
57
3.28%
T3O
48
2.76%
DWF4/CYP90B1
48
2.76%
F3H
45
2.59%
F3'H/CYP75B
42
2.42%
STR
39
2.24%
BR6OX2/CYP85A2
36
2.07%
IFR
34
1.96%
UGT
32
1.84%
CODM/T6ODM
31
1.78%
7DLGT
28
1.61%
PYKS
27
1.55%
UFGT
27
1.55%
GS
26
1.5%
COMT
26
1.5%
G8O/G8H
22
1.27%
H6H
20
1.15%
T16H
20
1.15%
LAC
20
1.15%
TRI/TRII
18
1.04%
IO
17
0.98%
CHS
17
0.98%
CYP71
16
0.92%
F3'5'H/CYP75A
14
0.81%
HCT
14
0.81%
SMT1/SMT2/SMT3
14
0.81%
SGD
12
0.69%
FNS
12
0.69%
CPD/CYP90A1
12
0.69%
16OMT
11
0.63%
RAS
11
0.63%
BR6OX1/CYP85A1
11
0.63%
SLS
10
0.58%
CAD
10
0.58%
CSE
10
0.58%
7DLH
9
0.52%
CCR
9
0.52%
CAS
8
0.46%
BBE
7
0.4%
CNMT
7
0.4%
CYP90D1
7
0.4%
AACT
7
0.4%
DXS
7
0.4%
NCS
6
0.35%
COR
6
0.35%
ANR
6
0.35%
CPR
6
0.35%
MPO
5
0.29%
ANS/LDOX
5
0.29%
DFR
5
0.29%
SMO1/SMO2
5
0.29%
8HGO
4
0.23%
6OMT_4OMT_SOMT
4
0.23%
GES
4
0.23%
TAT
4
0.23%
SQS/FDFT1
4
0.23%
GGPPS
4
0.23%
PMT
3
0.17%
CYP719
3
0.17%
CHI
3
0.17%
F5H/CYP84A
3
0.17%
DWF1
3
0.17%
ROT3/CYP90C1
3
0.17%
DET2
3
0.17%
IDI
3
0.17%
MVK
3
0.17%
HMGR
3
0.17%
ISY
2
0.12%
LAMT
2
0.12%
ADC
2
0.12%
TDC
2
0.12%
CYP80B1
2
0.12%
ODC
2
0.12%
FLS
2
0.12%
CCoAOMT
2
0.12%
HPPR
2
0.12%
DWF5
2
0.12%
MVD
2
0.12%
FPPS
2
0.12%
MDS/IspF
2
0.12%
HMGS
2
0.12%
TYDC_DDC
1
0.06%
XMT_MXMT_DXMT
1
0.06%
CYP51G1
1
0.06%
FK
1
0.06%
CPI1
1
0.06%
SQE
1
0.06%
DWF7
1
0.06%
HYD1
1
0.06%
HDR/IspH
1
0.06%
GPPS
1
0.06%
TPS
1
0.06%
CMK/IspE
1
0.06%
PMK
1
0.06%
HDS/IspG
1
0.06%
DXR
1
0.06%
MCT/IspD
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 164 | 11 | POD (61) | View species results |
| Terpenoid pathway | 137 | 17 | BAHD (50) | View species results |
| Alkaloid pathway | 115 | 16 | NMT (17) | View species results |
| Rosmarinic acid pathway | 83 | 7 | C4H (37) | View species results |
| Flavonoid pathway | 78 | 7 | UFGT (24) | View species results |
| Steroid pathway | 30 | 12 | CAS (8) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 23 | 735 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 103 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Palpscaffold_10028160 | Rosmarinic Acid | PAL | medium | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Palpscaffold_10028170 | Rosmarinic Acid | PAL | medium | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Palpscaffold_20042470 | Rosmarinic Acid | PAL | medium | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Palpscaffold_20042480 | Rosmarinic Acid | PAL | medium | pass | PAL__00002__sp_P35510_PAL1_ARATH |
| Palpscaffold_20042530 | Rosmarinic Acid | PAL | medium | pass | PAL__00002__sp_P35510_PAL1_ARATH |
| Palpscaffold_20042540 | Rosmarinic Acid | PAL | medium | pass | PAL__00008__sp_Q8VXG7_PALY_MAIZE |
| Palpscaffold_20042560 | Rosmarinic Acid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Palpscaffold_20043610 | Rosmarinic Acid | PAL | medium | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Palpscaffold_20043620 | Rosmarinic Acid | PAL | high | pass | PAL__00002__sp_P35510_PAL1_ARATH |
| Palpscaffold_20043630 | Rosmarinic Acid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Palpscaffold_30061380 | Rosmarinic Acid | PAL | medium | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Palpscaffold_30065360 | Rosmarinic Acid | PAL | low | borderline | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Palpscaffold_40082780 | Rosmarinic Acid | PAL | medium | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Palpscaffold_40082790 | Rosmarinic Acid | PAL | medium | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Palpscaffold_40082800 | Rosmarinic Acid | PAL | medium | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Palpscaffold_40083730 | Rosmarinic Acid | PAL | medium | pass | PAL__00008__sp_Q8VXG7_PALY_MAIZE |
| Palpscaffold_50133330 | Rosmarinic Acid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Palpscaffold_50138140 | Rosmarinic Acid | PAL | low | borderline | PAL__00001__sp_P24481_PAL1_PETCR |
| Palpscaffold_60166470 | Rosmarinic Acid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |
| Palpscaffold_60168550 | Rosmarinic Acid | PAL | high | pass | PAL__00003__sp_P45724_PAL2_ARATH |
| Palpscaffold_60168560 | Rosmarinic Acid | PAL | high | pass | PAL__00009__sp_Q9SS45_PAL4_ARATH |
| Palpscaffold_70194740 | Rosmarinic Acid | PAL | high | pass | PAL__00001__sp_P24481_PAL1_PETCR |