PlantSME Plant secondary metabolism enzyme database

Polytrichastrum alpinum (polytrichastrum_alpinum)

Imported from atlas release summary for Polytrichastrum alpinum.

607
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (97)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 164 11 POD (61) View species results
Terpenoid pathway 137 17 BAHD (50) View species results
Alkaloid pathway 115 16 NMT (17) View species results
Rosmarinic acid pathway 83 7 C4H (37) View species results
Flavonoid pathway 78 7 UFGT (24) View species results
Steroid pathway 30 12 CAS (8) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 23 735 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 103 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Palpscaffold_60173120 Alkaloid IO medium borderline
Palpscaffold_60176230 Alkaloid IO low borderline
Palpscaffold_70197760 Alkaloid IO medium borderline
Palpscaffold_10002190 Alkaloid ISY medium pass
Palpscaffold_60166980 Alkaloid ISY medium pass
Palpscaffold_20042330 Alkaloid LAMT low borderline
Palpscaffold_20043070 Alkaloid LAMT medium borderline
Palpscaffold_10009340 Alkaloid MPO medium pass
Palpscaffold_20036200 Alkaloid MPO medium pass
Palpscaffold_40087500 Alkaloid MPO medium pass
Palpscaffold_50140790 Alkaloid MPO medium pass
Palpscaffold_60149400 Alkaloid MPO high pass
Palpscaffold_40088680 Alkaloid NCS low borderline
Palpscaffold_40090610 Alkaloid NCS low borderline
Palpscaffold_40095120 Alkaloid NCS low borderline
Palpscaffold_60148680 Alkaloid NCS medium borderline
Palpscaffold_70181900 Alkaloid NCS medium borderline
Palpscaffold_70202240 Alkaloid NCS medium borderline
Palpscaffold_20033920 Alkaloid NMT low borderline
Palpscaffold_20038540 Alkaloid NMT medium pass
Palpscaffold_20040450 Alkaloid NMT medium pass
Palpscaffold_20040980 Alkaloid NMT medium borderline
Palpscaffold_20042350 Alkaloid NMT low borderline
Palpscaffold_20042850 Alkaloid NMT low borderline
Palpscaffold_20045170 Alkaloid NMT low borderline
Palpscaffold_20050390 Alkaloid NMT medium borderline
Palpscaffold_20053340 Alkaloid NMT medium borderline
Palpscaffold_210053980 Alkaloid NMT medium pass
Palpscaffold_30062360 Alkaloid NMT low borderline
Palpscaffold_30064170 Alkaloid NMT low borderline
Palpscaffold_30067190 Alkaloid NMT medium pass
Palpscaffold_30070000 Alkaloid NMT low borderline
Palpscaffold_30076070 Alkaloid NMT low borderline
Palpscaffold_40078970 Alkaloid NMT medium pass
Palpscaffold_40083120 Alkaloid NMT medium borderline
Palpscaffold_40087160 Alkaloid NMT medium borderline
Palpscaffold_40089520 Alkaloid NMT medium borderline
Palpscaffold_40094490 Alkaloid NMT low borderline
Palpscaffold_40099550 Alkaloid NMT low borderline
Palpscaffold_40099840 Alkaloid NMT low borderline
Palpscaffold_40102400 Alkaloid NMT low borderline
Palpscaffold_50109900 Alkaloid NMT low borderline
Palpscaffold_50109920 Alkaloid NMT low borderline
Palpscaffold_50116040 Alkaloid NMT medium pass
Palpscaffold_50116050 Alkaloid NMT medium pass
Palpscaffold_50120170 Alkaloid NMT low borderline
Palpscaffold_50136890 Alkaloid NMT low borderline
Palpscaffold_50138530 Alkaloid NMT medium pass
Palpscaffold_50143880 Alkaloid NMT low borderline
Palpscaffold_50145340 Alkaloid NMT medium pass