PlantSME Plant secondary metabolism enzyme database

Pyrrhobryum spiniforme (pyrrhobryum_spiniforme)

Imported from atlas release summary for Pyrrhobryum spiniforme.

757
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 23.12% Alkaloid pathway 21.93% Terpenoid pathway 19.82% Flavonoid pathway 18.63% Rosmarinic acid pathway 10.83% Steroid pathway 5.68%
Family Distribution
C4H 6.84% BAHD 5.46% C3'H/CYP98A 5.3% POD 4.97% 4CL 4.47% PAL 4.3% CYP76 3.81% PYKS 3.7%
Other Families 61.15%
More Families (97)
NMT 64 3.53% CHS 64 3.53% IFS 49 2.7% F3H 44 2.43% BR6OX2/CYP85A2 41 2.26% STR 40 2.21% T3O 39 2.15% F3'H/CYP75B 39 2.15% GS 37 2.04% IFR 37 2.04% DWF4/CYP90B1 37 2.04% UFGT 30 1.66% UGT 30 1.66% 7DLGT 29 1.6% CODM/T6ODM 28 1.55% CAD 23 1.27% IO 22 1.21% T16H 21 1.16% SMT1/SMT2/SMT3 21 1.16% CYP71 18 0.99% H6H 17 0.94% CAS 17 0.94% LAC 15 0.83% COMT 14 0.77% SLS 13 0.72% NCS 13 0.72% RAS 13 0.72% HCT 12 0.66% 7DLH 11 0.61% SGD 10 0.55% PMT 10 0.55% F3'5'H/CYP75A 10 0.55% TRI/TRII 9 0.5% CSE 9 0.5% CNMT 8 0.44% 8HGO 8 0.44% COR 8 0.44% CPD/CYP90A1 8 0.44% SQS/FDFT1 8 0.44% CYP90D1 8 0.44% CCR 7 0.39% BR6OX1/CYP85A1 7 0.39% G8O/G8H 6 0.33% 16OMT 6 0.33% FNS 6 0.33% HDS/IspG 6 0.33% BBE 5 0.28% ANR 5 0.28% TAT 5 0.28% CPR 5 0.28% DWF5 5 0.28% DWF1 5 0.28% GGPPS 5 0.28% AACT 5 0.28% TDC 4 0.22% MPO 4 0.22% LAMT 4 0.22% GES 4 0.22% CHI 4 0.22% F5H/CYP84A 4 0.22% MVK 4 0.22% TPS 4 0.22% TYDC_DDC 3 0.17% ISY 3 0.17% DFR 3 0.17% SQE 3 0.17% DET2 3 0.17% ROT3/CYP90C1 3 0.17% SMO1/SMO2 3 0.17% HYD1 3 0.17% ADC 2 0.11% CYP719 2 0.11% FLS 2 0.11% ANS/LDOX 2 0.11% CCoAOMT 2 0.11% CYP51G1 2 0.11% FPPS 2 0.11% HMGS 2 0.11% HDR/IspH 2 0.11% MVD 2 0.11% DXR 2 0.11% MCT/IspD 2 0.11% DXS 2 0.11% XMT_MXMT_DXMT 1 0.06% CYP80F1 1 0.06% CYP80B1 1 0.06% 6OMT_4OMT_SOMT 1 0.06% ODC 1 0.06% HPPR 1 0.06% CPI1 1 0.06% FK 1 0.06% DWF7 1 0.06% IDI 1 0.06% CMK/IspE 1 0.06% MDS/IspF 1 0.06% PMK 1 0.06% HMGR 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 175 10 POD (83) View species results
Alkaloid pathway 166 16 PYKS (51) View species results
Terpenoid pathway 150 19 BAHD (65) View species results
Flavonoid pathway 141 9 CHS (61) View species results
Rosmarinic acid pathway 82 7 C4H (31) View species results
Steroid pathway 43 12 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 631 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 124 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CHS
Reset
Gene Pathway Family Confidence Status Best Target
Pspiscaffold_90262220 Flavonoid CHS medium pass CHS__00008__sp_Q9AU09_PKS3_RUBID
Pspiscaffold_90262230 Flavonoid CHS medium pass CHS__00010__sp_Q9FEY5_CHSH1_HUMLU
Pspiscaffold_90270290 Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
Pspiscaffold_90271280 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Pspiscaffold_90271300 Flavonoid CHS medium pass CHS__00011__sp_Q9FUB7_CHSY_HYPAN
Pspiscaffold_90272390 Flavonoid CHS medium pass CHS__00009__sp_Q9AU11_PKS1_RUBID
Pspiscaffold_90281660 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Pspiscaffold_90282770 Flavonoid CHS low borderline CHS__00007__sp_Q8RVK9_CHS_CANSA
Pspiscaffold_90284020 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Pspiscaffold_90284040 Flavonoid CHS medium pass CHS__00007__sp_Q8RVK9_CHS_CANSA
Pspiscaffold_90290090 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Pspiscaffold_90293470 Flavonoid CHS medium pass CHS__00006__sp_P30074_CHS2_MEDSA
Pspiscaffold_90296480 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA
Pspiscaffold_90297050 Flavonoid CHS medium pass CHS__00001__sp_A0A2Z5QL08_CHS_RHODA