Pyrrhobryum spiniforme (pyrrhobryum_spiniforme)
Imported from atlas release summary for Pyrrhobryum spiniforme.
757
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
757
Candidate Genes
C4H
6.84%
BAHD
5.46%
C3'H/CYP98A
5.3%
POD
4.97%
4CL
4.47%
PAL
4.3%
CYP76
3.81%
PYKS
3.7%
Other Families
61.15%
More Families (97)
NMT
64
3.53%
CHS
64
3.53%
IFS
49
2.7%
F3H
44
2.43%
BR6OX2/CYP85A2
41
2.26%
STR
40
2.21%
T3O
39
2.15%
F3'H/CYP75B
39
2.15%
GS
37
2.04%
IFR
37
2.04%
DWF4/CYP90B1
37
2.04%
UFGT
30
1.66%
UGT
30
1.66%
7DLGT
29
1.6%
CODM/T6ODM
28
1.55%
CAD
23
1.27%
IO
22
1.21%
T16H
21
1.16%
SMT1/SMT2/SMT3
21
1.16%
CYP71
18
0.99%
H6H
17
0.94%
CAS
17
0.94%
LAC
15
0.83%
COMT
14
0.77%
SLS
13
0.72%
NCS
13
0.72%
RAS
13
0.72%
HCT
12
0.66%
7DLH
11
0.61%
SGD
10
0.55%
PMT
10
0.55%
F3'5'H/CYP75A
10
0.55%
TRI/TRII
9
0.5%
CSE
9
0.5%
CNMT
8
0.44%
8HGO
8
0.44%
COR
8
0.44%
CPD/CYP90A1
8
0.44%
SQS/FDFT1
8
0.44%
CYP90D1
8
0.44%
CCR
7
0.39%
BR6OX1/CYP85A1
7
0.39%
G8O/G8H
6
0.33%
16OMT
6
0.33%
FNS
6
0.33%
HDS/IspG
6
0.33%
BBE
5
0.28%
ANR
5
0.28%
TAT
5
0.28%
CPR
5
0.28%
DWF5
5
0.28%
DWF1
5
0.28%
GGPPS
5
0.28%
AACT
5
0.28%
TDC
4
0.22%
MPO
4
0.22%
LAMT
4
0.22%
GES
4
0.22%
CHI
4
0.22%
F5H/CYP84A
4
0.22%
MVK
4
0.22%
TPS
4
0.22%
TYDC_DDC
3
0.17%
ISY
3
0.17%
DFR
3
0.17%
SQE
3
0.17%
DET2
3
0.17%
ROT3/CYP90C1
3
0.17%
SMO1/SMO2
3
0.17%
HYD1
3
0.17%
ADC
2
0.11%
CYP719
2
0.11%
FLS
2
0.11%
ANS/LDOX
2
0.11%
CCoAOMT
2
0.11%
CYP51G1
2
0.11%
FPPS
2
0.11%
HMGS
2
0.11%
HDR/IspH
2
0.11%
MVD
2
0.11%
DXR
2
0.11%
MCT/IspD
2
0.11%
DXS
2
0.11%
XMT_MXMT_DXMT
1
0.06%
CYP80F1
1
0.06%
CYP80B1
1
0.06%
6OMT_4OMT_SOMT
1
0.06%
ODC
1
0.06%
HPPR
1
0.06%
CPI1
1
0.06%
FK
1
0.06%
DWF7
1
0.06%
IDI
1
0.06%
CMK/IspE
1
0.06%
MDS/IspF
1
0.06%
PMK
1
0.06%
HMGR
1
0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Phenylpropanoid pathway | 175 | 10 | POD (83) | View species results |
| Alkaloid pathway | 166 | 16 | PYKS (51) | View species results |
| Terpenoid pathway | 150 | 19 | BAHD (65) | View species results |
| Flavonoid pathway | 141 | 9 | CHS (61) | View species results |
| Rosmarinic acid pathway | 82 | 7 | C4H (31) | View species results |
| Steroid pathway | 43 | 12 | CAS (14) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 631 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 124 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Pspiscaffold_100023190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_100024920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_10012490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_10020130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_110030790 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_20041540 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_20042780 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_20046600 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_20049770 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pspiscaffold_20051670 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_30065460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_30072550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_40080890 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_50091150 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pspiscaffold_50112550 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_60120840 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_60124520 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_60130390 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_60131310 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pspiscaffold_70155720 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_70161030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_70163450 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_70163920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_70175290 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pspiscaffold_70203630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_70203660 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_790205890 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_80224000 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pspiscaffold_80241830 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_80247170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_80247580 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_80247590 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_80255000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_80255510 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_80256250 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pspiscaffold_90259090 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_90261020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_90274240 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Pspiscaffold_90278920 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Pspiscaffold_910299170 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |