PlantSME Plant secondary metabolism enzyme database

Pyrrhobryum spiniforme (pyrrhobryum_spiniforme)

Imported from atlas release summary for Pyrrhobryum spiniforme.

757
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Current group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Bryophytes
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Phenylpropanoid pathway 23.12% Alkaloid pathway 21.93% Terpenoid pathway 19.82% Flavonoid pathway 18.63% Rosmarinic acid pathway 10.83% Steroid pathway 5.68%
Family Distribution
C4H 6.84% BAHD 5.46% C3'H/CYP98A 5.3% POD 4.97% 4CL 4.47% PAL 4.3% CYP76 3.81% PYKS 3.7%
Other Families 61.15%
More Families (97)
NMT 64 3.53% CHS 64 3.53% IFS 49 2.7% F3H 44 2.43% BR6OX2/CYP85A2 41 2.26% STR 40 2.21% T3O 39 2.15% F3'H/CYP75B 39 2.15% GS 37 2.04% IFR 37 2.04% DWF4/CYP90B1 37 2.04% UFGT 30 1.66% UGT 30 1.66% 7DLGT 29 1.6% CODM/T6ODM 28 1.55% CAD 23 1.27% IO 22 1.21% T16H 21 1.16% SMT1/SMT2/SMT3 21 1.16% CYP71 18 0.99% H6H 17 0.94% CAS 17 0.94% LAC 15 0.83% COMT 14 0.77% SLS 13 0.72% NCS 13 0.72% RAS 13 0.72% HCT 12 0.66% 7DLH 11 0.61% SGD 10 0.55% PMT 10 0.55% F3'5'H/CYP75A 10 0.55% TRI/TRII 9 0.5% CSE 9 0.5% CNMT 8 0.44% 8HGO 8 0.44% COR 8 0.44% CPD/CYP90A1 8 0.44% SQS/FDFT1 8 0.44% CYP90D1 8 0.44% CCR 7 0.39% BR6OX1/CYP85A1 7 0.39% G8O/G8H 6 0.33% 16OMT 6 0.33% FNS 6 0.33% HDS/IspG 6 0.33% BBE 5 0.28% ANR 5 0.28% TAT 5 0.28% CPR 5 0.28% DWF5 5 0.28% DWF1 5 0.28% GGPPS 5 0.28% AACT 5 0.28% TDC 4 0.22% MPO 4 0.22% LAMT 4 0.22% GES 4 0.22% CHI 4 0.22% F5H/CYP84A 4 0.22% MVK 4 0.22% TPS 4 0.22% TYDC_DDC 3 0.17% ISY 3 0.17% DFR 3 0.17% SQE 3 0.17% DET2 3 0.17% ROT3/CYP90C1 3 0.17% SMO1/SMO2 3 0.17% HYD1 3 0.17% ADC 2 0.11% CYP719 2 0.11% FLS 2 0.11% ANS/LDOX 2 0.11% CCoAOMT 2 0.11% CYP51G1 2 0.11% FPPS 2 0.11% HMGS 2 0.11% HDR/IspH 2 0.11% MVD 2 0.11% DXR 2 0.11% MCT/IspD 2 0.11% DXS 2 0.11% XMT_MXMT_DXMT 1 0.06% CYP80F1 1 0.06% CYP80B1 1 0.06% 6OMT_4OMT_SOMT 1 0.06% ODC 1 0.06% HPPR 1 0.06% CPI1 1 0.06% FK 1 0.06% DWF7 1 0.06% IDI 1 0.06% CMK/IspE 1 0.06% MDS/IspF 1 0.06% PMK 1 0.06% HMGR 1 0.06%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Phenylpropanoid pathway 175 10 POD (83) View species results
Alkaloid pathway 166 16 PYKS (51) View species results
Terpenoid pathway 150 19 BAHD (65) View species results
Flavonoid pathway 141 9 CHS (61) View species results
Rosmarinic acid pathway 82 7 C4H (31) View species results
Steroid pathway 43 12 CAS (14) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 631 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 124 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
Reset
Gene Pathway Family Confidence Status
Pspiscaffold_80233980 Alkaloid PYKS high pass
Pspiscaffold_80240990 Alkaloid PYKS high pass
Pspiscaffold_80241000 Alkaloid PYKS high pass
Pspiscaffold_80254130 Alkaloid PYKS low borderline
Pspiscaffold_90262220 Alkaloid PYKS low borderline
Pspiscaffold_90262230 Alkaloid PYKS medium pass
Pspiscaffold_90270290 Alkaloid PYKS medium pass
Pspiscaffold_90270920 Alkaloid PYKS low borderline
Pspiscaffold_90271280 Alkaloid PYKS high pass
Pspiscaffold_90271300 Alkaloid PYKS high pass
Pspiscaffold_90281660 Alkaloid PYKS medium pass
Pspiscaffold_90282770 Alkaloid PYKS medium pass
Pspiscaffold_90282780 Alkaloid PYKS low borderline
Pspiscaffold_90284020 Alkaloid PYKS medium pass
Pspiscaffold_90293470 Alkaloid PYKS medium pass
Pspiscaffold_90296480 Alkaloid PYKS medium pass
Pspiscaffold_90297050 Alkaloid PYKS high pass