PlantSME Plant secondary metabolism enzyme database

Rosmarinus officinalis (rosmarinus_officinalis)

Imported from atlas release summary for Rosmarinus officinalis.

2746
Candidate Protein Records
2162
Pathway-Level Records
5616
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 31.68% Phenylpropanoid pathway 20.21% Alkaloid pathway 18.78% Flavonoid pathway 12.16% Rosmarinic acid pathway 10.82% Steroid pathway 6.34%
Family Distribution
C4H 6.93% BAHD 6.39% C3'H/CYP98A 6.13% 4CL 4.33% IFS 4.27% T3O 4.04% CYP76 4.01% POD 3.47%
Other Families 60.43%
More Families (97)
UGT 194 3.45% NMT 180 3.21% 7DLGT 179 3.19% UFGT 179 3.19% DWF4/CYP90B1 155 2.76% F3H 129 2.3% F3'H/CYP75B 124 2.21% BR6OX2/CYP85A2 111 1.98% STR 106 1.89% CYP71 84 1.5% CODM/T6ODM 83 1.48% SMT1/SMT2/SMT3 74 1.32% IFR 69 1.23% LAC 69 1.23% CAD 62 1.1% T16H 57 1.01% CAS 55 0.98% GS 52 0.93% H6H 50 0.89% PYKS 49 0.87% TPS 49 0.87% HCT 48 0.85% GES 45 0.8% TRI/TRII 44 0.78% BBE 44 0.78% CSE 42 0.75% RAS 42 0.75% 7DLH 41 0.73% TAT 41 0.73% G8O/G8H 39 0.69% CYP51G1 36 0.64% CYP90D1 35 0.62% PMT 34 0.61% SLS 33 0.59% ANR 33 0.59% FNS 31 0.55% IO 29 0.52% F5H/CYP84A 29 0.52% CCR 29 0.52% NCS 27 0.48% COMT 27 0.48% 8HGO 26 0.46% BR6OX1/CYP85A1 26 0.46% CPD/CYP90A1 25 0.45% FPPS 23 0.41% LAMT 21 0.37% 16OMT 20 0.36% F3'5'H/CYP75A 20 0.36% CNMT 19 0.34% GGPPS 19 0.34% SGD 15 0.27% ANS/LDOX 15 0.27% PAL 15 0.27% CCoAOMT 15 0.27% DXS 15 0.27% PMK 15 0.27% TYDC_DDC 14 0.25% CHS 14 0.25% CPR 14 0.25% HMGR 13 0.23% SQS/FDFT1 12 0.21% ROT3/CYP90C1 12 0.21% AACT 12 0.21% MPO 11 0.2% HPPR 11 0.2% MVD 11 0.2% DFR 10 0.18% COR 9 0.16% SMO1/SMO2 9 0.16% CYP80B1 8 0.14% FLS 8 0.14% SQE 8 0.14% ISY 7 0.12% DET2 7 0.12% MCT/IspD 7 0.12% FK 5 0.09% HDS/IspG 5 0.09% HDR/IspH 5 0.09% 6OMT_4OMT_SOMT 4 0.07% CYP719 4 0.07% CYP80F1 4 0.07% DWF1 4 0.07% MVK 4 0.07% IDI 4 0.07% ADC 3 0.05% CHI 3 0.05% CPI1 3 0.05% DWF5 3 0.05% CMK/IspE 3 0.05% HMGS 3 0.05% TDC 2 0.04% DWF7 2 0.04% HYD1 2 0.04% DXR 2 0.04% MDS/IspF 2 0.04% XMT_MXMT_DXMT 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 685 19 BAHD (284) View species results
Phenylpropanoid pathway 437 11 POD (182) View species results
Alkaloid pathway 406 21 NMT (94) View species results
Flavonoid pathway 263 13 UFGT (168) View species results
Rosmarinic acid pathway 234 7 C4H (111) View species results
Steroid pathway 137 14 SMT1/SMT2/SMT3 (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2297 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 449 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
Roff3823400435950 Alkaloid 7DLGT medium pass
Roff3823400435960 Alkaloid 7DLGT low borderline
Roff3831020437970 Alkaloid 7DLGT medium pass
Roff3833650438710 Alkaloid 7DLGT low borderline
Roff3839220440090 Alkaloid 7DLGT low borderline
Roff3849610443240 Alkaloid 7DLGT medium pass
Roff3857000445110 Alkaloid 7DLGT low borderline
Roff3859310446020 Alkaloid 7DLGT medium pass
Roff3879950453390 Alkaloid 7DLGT medium pass
Roff3881500453580 Alkaloid 7DLGT medium pass
Roff3881500453600 Alkaloid 7DLGT medium pass
Roff3881500453710 Alkaloid 7DLGT low borderline
Roff3881500453840 Alkaloid 7DLGT low borderline
Roff3885380454820 Alkaloid 7DLGT high pass
Roff3885380454830 Alkaloid 7DLGT high pass
Roff3889290456580 Alkaloid 7DLGT high pass
Roff3889290456590 Alkaloid 7DLGT low borderline
Roff3919270471260 Alkaloid 7DLGT low borderline
Roff3938000478870 Alkaloid 7DLGT medium pass
Roff3942420480950 Alkaloid 7DLGT medium pass
Roff3963020482250 Alkaloid 7DLGT high pass
Roff3963030482270 Alkaloid 7DLGT high pass
Roff4090120482680 Alkaloid 7DLGT medium pass
Roff4106740482810 Alkaloid 7DLGT medium pass
Roff4947920485330 Alkaloid 7DLGT medium pass
Roff5343370486880 Alkaloid 7DLGT medium pass
Roff8210504190 Alkaloid 7DLGT low borderline
Roff8300510070 Alkaloid 7DLGT low borderline
Roff8300510080 Alkaloid 7DLGT low borderline