Rosmarinus officinalis (rosmarinus_officinalis)
Imported from atlas release summary for Rosmarinus officinalis.
2162
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2162
Candidate Genes
C4H
6.93%
BAHD
6.39%
C3'H/CYP98A
6.13%
4CL
4.33%
IFS
4.27%
T3O
4.04%
CYP76
4.01%
POD
3.47%
Other Families
60.43%
More Families (97)
UGT
194
3.45%
NMT
180
3.21%
7DLGT
179
3.19%
UFGT
179
3.19%
DWF4/CYP90B1
155
2.76%
F3H
129
2.3%
F3'H/CYP75B
124
2.21%
BR6OX2/CYP85A2
111
1.98%
STR
106
1.89%
CYP71
84
1.5%
CODM/T6ODM
83
1.48%
SMT1/SMT2/SMT3
74
1.32%
IFR
69
1.23%
LAC
69
1.23%
CAD
62
1.1%
T16H
57
1.01%
CAS
55
0.98%
GS
52
0.93%
H6H
50
0.89%
PYKS
49
0.87%
TPS
49
0.87%
HCT
48
0.85%
GES
45
0.8%
TRI/TRII
44
0.78%
BBE
44
0.78%
CSE
42
0.75%
RAS
42
0.75%
7DLH
41
0.73%
TAT
41
0.73%
G8O/G8H
39
0.69%
CYP51G1
36
0.64%
CYP90D1
35
0.62%
PMT
34
0.61%
SLS
33
0.59%
ANR
33
0.59%
FNS
31
0.55%
IO
29
0.52%
F5H/CYP84A
29
0.52%
CCR
29
0.52%
NCS
27
0.48%
COMT
27
0.48%
8HGO
26
0.46%
BR6OX1/CYP85A1
26
0.46%
CPD/CYP90A1
25
0.45%
FPPS
23
0.41%
LAMT
21
0.37%
16OMT
20
0.36%
F3'5'H/CYP75A
20
0.36%
CNMT
19
0.34%
GGPPS
19
0.34%
SGD
15
0.27%
ANS/LDOX
15
0.27%
PAL
15
0.27%
CCoAOMT
15
0.27%
DXS
15
0.27%
PMK
15
0.27%
TYDC_DDC
14
0.25%
CHS
14
0.25%
CPR
14
0.25%
HMGR
13
0.23%
SQS/FDFT1
12
0.21%
ROT3/CYP90C1
12
0.21%
AACT
12
0.21%
MPO
11
0.2%
HPPR
11
0.2%
MVD
11
0.2%
DFR
10
0.18%
COR
9
0.16%
SMO1/SMO2
9
0.16%
CYP80B1
8
0.14%
FLS
8
0.14%
SQE
8
0.14%
ISY
7
0.12%
DET2
7
0.12%
MCT/IspD
7
0.12%
FK
5
0.09%
HDS/IspG
5
0.09%
HDR/IspH
5
0.09%
6OMT_4OMT_SOMT
4
0.07%
CYP719
4
0.07%
CYP80F1
4
0.07%
DWF1
4
0.07%
MVK
4
0.07%
IDI
4
0.07%
ADC
3
0.05%
CHI
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
CMK/IspE
3
0.05%
HMGS
3
0.05%
TDC
2
0.04%
DWF7
2
0.04%
HYD1
2
0.04%
DXR
2
0.04%
MDS/IspF
2
0.04%
XMT_MXMT_DXMT
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 685 | 19 | BAHD (284) | View species results |
| Phenylpropanoid pathway | 437 | 11 | POD (182) | View species results |
| Alkaloid pathway | 406 | 21 | NMT (94) | View species results |
| Flavonoid pathway | 263 | 13 | UFGT (168) | View species results |
| Rosmarinic acid pathway | 234 | 7 | C4H (111) | View species results |
| Steroid pathway | 137 | 14 | SMT1/SMT2/SMT3 (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2297 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 449 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Roff10160007960 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Roff10160009080 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Roff10170010450 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| Roff10170013480 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Roff10200017300 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Roff10200018040 | Phenylpropanoid | POD | low | borderline | POD__00006__sp_O22850_GPX3_ARATH |
| Roff10240023530 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Roff10240025150 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Roff10240025160 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Roff10250026310 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Roff10280031430 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Roff10300040840 | Phenylpropanoid | POD | medium | pass | POD__00010__sp_P84516_PER1_SORBI |
| Roff10300042270 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Roff10300045440 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Roff10320046390 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Roff10330047760 | Phenylpropanoid | POD | medium | pass | POD__00002__sp_A5H8G4_PER1_MAIZE |
| Roff10420051740 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Roff10420052050 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Roff10440058090 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Roff10490062520 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Roff10490063870 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Roff10490064460 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Roff10510066730 | Phenylpropanoid | POD | low | borderline | POD__00008__sp_P52574_REHY_SYNRU |
| Roff10590073800 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Roff10590073810 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Roff10590073820 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Roff10590073830 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Roff10590073840 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Roff10590076580 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Roff11120090230 | Phenylpropanoid | POD | medium | pass | POD__00012__sp_Q10N21_APX1_ORYSJ |
| Roff11470096900 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Roff11520101000 | Phenylpropanoid | POD | medium | pass | POD__00013__sp_Q4W1I8_PER1_ZINEL |
| Roff11520101010 | Phenylpropanoid | POD | low | borderline | POD__00012__sp_Q10N21_APX1_ORYSJ |
| Roff11520101200 | Phenylpropanoid | POD | medium | pass | POD__00011__sp_Q05431_APX1_ARATH |
| Roff11520103100 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Roff11520103110 | Phenylpropanoid | POD | medium | pass | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Roff11530104780 | Phenylpropanoid | POD | medium | pass | POD__00021__sp_Q9LEH3_PER15_IPOBA |
| Roff11530107450 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Roff11530112120 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Roff11530113480 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Roff11530113490 | Phenylpropanoid | POD | medium | pass | POD__00028__sp_Q9ZVD5_AGO4_ARATH |
| Roff11530114280 | Phenylpropanoid | POD | medium | pass | POD__00027__sp_Q9XIV8_PERN1_TOBAC |
| Roff11680119160 | Phenylpropanoid | POD | low | borderline | POD__00019__sp_Q949Y3_PPA26_ARATH |
| Roff11790121110 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Roff12130128570 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Roff12130128580 | Phenylpropanoid | POD | medium | pass | POD__00024__sp_Q9SCX8_PPA17_ARATH |
| Roff12580140520 | Phenylpropanoid | POD | medium | pass | POD__00001__sp_A5H452_PER70_MAIZE |
| Roff12730152900 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Roff12730152910 | Phenylpropanoid | POD | medium | pass | POD__00006__sp_O22850_GPX3_ARATH |
| Roff13360165960 | Phenylpropanoid | POD | medium | pass | POD__00018__sp_Q8H0V5_OCP3_ARATH |