PlantSME Plant secondary metabolism enzyme database

Rosmarinus officinalis (rosmarinus_officinalis)

Imported from atlas release summary for Rosmarinus officinalis.

2162
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 31.68% Phenylpropanoid pathway 20.21% Alkaloid pathway 18.78% Flavonoid pathway 12.16% Rosmarinic acid pathway 10.82% Steroid pathway 6.34%
Family Distribution
C4H 6.93% BAHD 6.39% C3'H/CYP98A 6.13% 4CL 4.33% IFS 4.27% T3O 4.04% CYP76 4.01% POD 3.47%
Other Families 60.43%
More Families (97)
UGT 194 3.45% NMT 180 3.21% 7DLGT 179 3.19% UFGT 179 3.19% DWF4/CYP90B1 155 2.76% F3H 129 2.3% F3'H/CYP75B 124 2.21% BR6OX2/CYP85A2 111 1.98% STR 106 1.89% CYP71 84 1.5% CODM/T6ODM 83 1.48% SMT1/SMT2/SMT3 74 1.32% IFR 69 1.23% LAC 69 1.23% CAD 62 1.1% T16H 57 1.01% CAS 55 0.98% GS 52 0.93% H6H 50 0.89% PYKS 49 0.87% TPS 49 0.87% HCT 48 0.85% GES 45 0.8% TRI/TRII 44 0.78% BBE 44 0.78% CSE 42 0.75% RAS 42 0.75% 7DLH 41 0.73% TAT 41 0.73% G8O/G8H 39 0.69% CYP51G1 36 0.64% CYP90D1 35 0.62% PMT 34 0.61% SLS 33 0.59% ANR 33 0.59% FNS 31 0.55% IO 29 0.52% F5H/CYP84A 29 0.52% CCR 29 0.52% NCS 27 0.48% COMT 27 0.48% 8HGO 26 0.46% BR6OX1/CYP85A1 26 0.46% CPD/CYP90A1 25 0.45% FPPS 23 0.41% LAMT 21 0.37% 16OMT 20 0.36% F3'5'H/CYP75A 20 0.36% CNMT 19 0.34% GGPPS 19 0.34% SGD 15 0.27% ANS/LDOX 15 0.27% PAL 15 0.27% CCoAOMT 15 0.27% DXS 15 0.27% PMK 15 0.27% TYDC_DDC 14 0.25% CHS 14 0.25% CPR 14 0.25% HMGR 13 0.23% SQS/FDFT1 12 0.21% ROT3/CYP90C1 12 0.21% AACT 12 0.21% MPO 11 0.2% HPPR 11 0.2% MVD 11 0.2% DFR 10 0.18% COR 9 0.16% SMO1/SMO2 9 0.16% CYP80B1 8 0.14% FLS 8 0.14% SQE 8 0.14% ISY 7 0.12% DET2 7 0.12% MCT/IspD 7 0.12% FK 5 0.09% HDS/IspG 5 0.09% HDR/IspH 5 0.09% 6OMT_4OMT_SOMT 4 0.07% CYP719 4 0.07% CYP80F1 4 0.07% DWF1 4 0.07% MVK 4 0.07% IDI 4 0.07% ADC 3 0.05% CHI 3 0.05% CPI1 3 0.05% DWF5 3 0.05% CMK/IspE 3 0.05% HMGS 3 0.05% TDC 2 0.04% DWF7 2 0.04% HYD1 2 0.04% DXR 2 0.04% MDS/IspF 2 0.04% XMT_MXMT_DXMT 1 0.02% GPPS 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 685 19 BAHD (284) View species results
Phenylpropanoid pathway 437 11 POD (182) View species results
Alkaloid pathway 406 21 NMT (94) View species results
Flavonoid pathway 263 13 UFGT (168) View species results
Rosmarinic acid pathway 234 7 C4H (111) View species results
Steroid pathway 137 14 SMT1/SMT2/SMT3 (48) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2297 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 449 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PMK
Reset
Gene Pathway Family Confidence Status Best Target
Roff11030086900 Terpenoid PMK low borderline PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff12880156660 Terpenoid PMK low borderline PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff21780291250 Terpenoid PMK low borderline PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff2728080359190 Terpenoid PMK low borderline PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff2728660359200 Terpenoid PMK medium pass PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff2970900375650 Terpenoid PMK medium pass PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff2970900375660 Terpenoid PMK medium pass PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff3154550379500 Terpenoid PMK low borderline PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff3514420400130 Terpenoid PMK low borderline PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff3687870413990 Terpenoid PMK medium pass PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff3748800422710 Terpenoid PMK medium pass PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff3754920423620 Terpenoid PMK low borderline PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff3805640432820 Terpenoid PMK medium pass PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff3846440442480 Terpenoid PMK low borderline PMK__00001__sp_Q9C6T1_PMK_ARATH
Roff3945580481690 Terpenoid PMK low borderline PMK__00001__sp_Q9C6T1_PMK_ARATH