Rosmarinus officinalis (rosmarinus_officinalis)
Imported from atlas release summary for Rosmarinus officinalis.
2162
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2162
Candidate Genes
C4H
6.93%
BAHD
6.39%
C3'H/CYP98A
6.13%
4CL
4.33%
IFS
4.27%
T3O
4.04%
CYP76
4.01%
POD
3.47%
Other Families
60.43%
More Families (97)
UGT
194
3.45%
NMT
180
3.21%
7DLGT
179
3.19%
UFGT
179
3.19%
DWF4/CYP90B1
155
2.76%
F3H
129
2.3%
F3'H/CYP75B
124
2.21%
BR6OX2/CYP85A2
111
1.98%
STR
106
1.89%
CYP71
84
1.5%
CODM/T6ODM
83
1.48%
SMT1/SMT2/SMT3
74
1.32%
IFR
69
1.23%
LAC
69
1.23%
CAD
62
1.1%
T16H
57
1.01%
CAS
55
0.98%
GS
52
0.93%
H6H
50
0.89%
PYKS
49
0.87%
TPS
49
0.87%
HCT
48
0.85%
GES
45
0.8%
TRI/TRII
44
0.78%
BBE
44
0.78%
CSE
42
0.75%
RAS
42
0.75%
7DLH
41
0.73%
TAT
41
0.73%
G8O/G8H
39
0.69%
CYP51G1
36
0.64%
CYP90D1
35
0.62%
PMT
34
0.61%
SLS
33
0.59%
ANR
33
0.59%
FNS
31
0.55%
IO
29
0.52%
F5H/CYP84A
29
0.52%
CCR
29
0.52%
NCS
27
0.48%
COMT
27
0.48%
8HGO
26
0.46%
BR6OX1/CYP85A1
26
0.46%
CPD/CYP90A1
25
0.45%
FPPS
23
0.41%
LAMT
21
0.37%
16OMT
20
0.36%
F3'5'H/CYP75A
20
0.36%
CNMT
19
0.34%
GGPPS
19
0.34%
SGD
15
0.27%
ANS/LDOX
15
0.27%
PAL
15
0.27%
CCoAOMT
15
0.27%
DXS
15
0.27%
PMK
15
0.27%
TYDC_DDC
14
0.25%
CHS
14
0.25%
CPR
14
0.25%
HMGR
13
0.23%
SQS/FDFT1
12
0.21%
ROT3/CYP90C1
12
0.21%
AACT
12
0.21%
MPO
11
0.2%
HPPR
11
0.2%
MVD
11
0.2%
DFR
10
0.18%
COR
9
0.16%
SMO1/SMO2
9
0.16%
CYP80B1
8
0.14%
FLS
8
0.14%
SQE
8
0.14%
ISY
7
0.12%
DET2
7
0.12%
MCT/IspD
7
0.12%
FK
5
0.09%
HDS/IspG
5
0.09%
HDR/IspH
5
0.09%
6OMT_4OMT_SOMT
4
0.07%
CYP719
4
0.07%
CYP80F1
4
0.07%
DWF1
4
0.07%
MVK
4
0.07%
IDI
4
0.07%
ADC
3
0.05%
CHI
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
CMK/IspE
3
0.05%
HMGS
3
0.05%
TDC
2
0.04%
DWF7
2
0.04%
HYD1
2
0.04%
DXR
2
0.04%
MDS/IspF
2
0.04%
XMT_MXMT_DXMT
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 685 | 19 | BAHD (284) | View species results |
| Phenylpropanoid pathway | 437 | 11 | POD (182) | View species results |
| Alkaloid pathway | 406 | 21 | NMT (94) | View species results |
| Flavonoid pathway | 263 | 13 | UFGT (168) | View species results |
| Rosmarinic acid pathway | 234 | 7 | C4H (111) | View species results |
| Steroid pathway | 137 | 14 | SMT1/SMT2/SMT3 (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2297 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 449 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: BAHD
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Roff19530254470 | Terpenoid | BAHD | medium | pass | BAHD__00062__sp_Q93V61_LCAT3_ARATH |
| Roff19530254690 | Terpenoid | BAHD | medium | pass | BAHD__00030__sp_O80816_GLC_ARATH |
| Roff1980740255610 | Terpenoid | BAHD | medium | pass | BAHD__00042__sp_Q500Z2_ZDH20_ARATH |
| Roff1980740255620 | Terpenoid | BAHD | medium | pass | BAHD__00042__sp_Q500Z2_ZDH20_ARATH |
| Roff1980740255630 | Terpenoid | BAHD | medium | pass | BAHD__00042__sp_Q500Z2_ZDH20_ARATH |
| Roff1980740255640 | Terpenoid | BAHD | medium | pass | BAHD__00042__sp_Q500Z2_ZDH20_ARATH |
| Roff19920256080 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Roff19920256090 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Roff20060258310 | Terpenoid | BAHD | medium | pass | BAHD__00017__sp_F4IDU4_MBOA1_ARATH |
| Roff20140258820 | Terpenoid | BAHD | medium | pass | BAHD__00027__sp_O80437_GPAT6_ARATH |
| Roff20590265090 | Terpenoid | BAHD | medium | pass | BAHD__00073__sp_Q9FF86_DCR_ARATH |
| Roff20620266810 | Terpenoid | BAHD | low | borderline | BAHD__00016__sp_D4NUX0_HCT1_ACTRA |
| Roff20850270400 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Roff20850270840 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Roff20850270850 | Terpenoid | BAHD | medium | pass | BAHD__00025__sp_O64810_SCP10_ARATH |
| Roff21030271640 | Terpenoid | BAHD | medium | pass | BAHD__00043__sp_Q52T38_ZDH22_ARATH |
| Roff21180275650 | Terpenoid | BAHD | low | borderline | BAHD__00026__sp_O64811_SCP9_ARATH |
| Roff21180276000 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Roff21180276010 | Terpenoid | BAHD | low | borderline | BAHD__00055__sp_Q8H780_SCP13_ARATH |
| Roff21260276540 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| Roff21280277160 | Terpenoid | BAHD | medium | pass | BAHD__00005__sp_A0A161IUT7_DGAT1_CORAE |
| Roff21280277300 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Roff21280277310 | Terpenoid | BAHD | medium | pass | BAHD__00077__sp_Q9FNA9_PDAT1_ARATH |
| Roff21280277370 | Terpenoid | BAHD | medium | pass | BAHD__00014__sp_B9RK42_GPC1_RICCO |
| Roff21350278570 | Terpenoid | BAHD | medium | pass | BAHD__00083__sp_Q9LMM0_GPAT4_ARATH |
| Roff21450284510 | Terpenoid | BAHD | medium | pass | BAHD__00035__sp_Q0WQK2_ZDHC9_ARATH |
| Roff21530285210 | Terpenoid | BAHD | medium | pass | BAHD__00036__sp_Q10L01_ZDHC9_ORYSJ |
| Roff21650288570 | Terpenoid | BAHD | medium | pass | BAHD__00072__sp_Q9FEQ0_GPAT1_CUCMO |
| Roff21720290310 | Terpenoid | BAHD | medium | pass | BAHD__00027__sp_O80437_GPAT6_ARATH |
| Roff21730290630 | Terpenoid | BAHD | medium | pass | BAHD__00010__sp_A0AAW1LG41_BAHD1_SAPOF |
| Roff21810294630 | Terpenoid | BAHD | medium | pass | BAHD__00059__sp_Q8S8S2_LPCT2_ARATH |
| Roff21810294850 | Terpenoid | BAHD | medium | pass | BAHD__00081__sp_Q9LJB4_5MAT_ARATH |
| Roff21810295050 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| Roff21810295060 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| Roff21810295070 | Terpenoid | BAHD | medium | pass | BAHD__00060__sp_Q8VYP5_ZDH14_ARATH |
| Roff22240298460 | Terpenoid | BAHD | medium | pass | BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH |
| Roff22240298470 | Terpenoid | BAHD | medium | pass | BAHD__00080__sp_Q9LIH7_ZDHC7_ARATH |
| Roff22340299590 | Terpenoid | BAHD | medium | pass | BAHD__00042__sp_Q500Z2_ZDH20_ARATH |
| Roff22550302400 | Terpenoid | BAHD | medium | pass | BAHD__00082__sp_Q9LLY4_LPAT1_BRANA |
| Roff22550302410 | Terpenoid | BAHD | medium | pass | BAHD__00082__sp_Q9LLY4_LPAT1_BRANA |
| Roff22550302420 | Terpenoid | BAHD | medium | pass | BAHD__00053__sp_Q8GXU8_LPAT1_ARATH |
| Roff22560303080 | Terpenoid | BAHD | medium | pass | BAHD__00093__sp_Q9SV07_ASAT1_ARATH |
| Roff22580303630 | Terpenoid | BAHD | low | borderline | BAHD__00025__sp_O64810_SCP10_ARATH |
| Roff24080310710 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| Roff24080310720 | Terpenoid | BAHD | medium | pass | BAHD__00058__sp_Q8LG50_LPAT2_ARATH |
| Roff24190316820 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Roff24190318340 | Terpenoid | BAHD | medium | pass | BAHD__00052__sp_Q8GWG0_GPAT9_ARATH |
| Roff24190318350 | Terpenoid | BAHD | medium | pass | BAHD__00052__sp_Q8GWG0_GPAT9_ARATH |
| Roff24200318870 | Terpenoid | BAHD | medium | pass | BAHD__00047__sp_Q5KS41_WSD11_ARATH |
| Roff24210319310 | Terpenoid | BAHD | medium | pass | BAHD__00039__sp_Q3ZPN4_ACMAT_VITLA |