Rosmarinus officinalis (rosmarinus_officinalis)
Imported from atlas release summary for Rosmarinus officinalis.
2162
Candidate Genes
105
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2162
Candidate Genes
C4H
6.93%
BAHD
6.39%
C3'H/CYP98A
6.13%
4CL
4.33%
IFS
4.27%
T3O
4.04%
CYP76
4.01%
POD
3.47%
Other Families
60.43%
More Families (97)
UGT
194
3.45%
NMT
180
3.21%
7DLGT
179
3.19%
UFGT
179
3.19%
DWF4/CYP90B1
155
2.76%
F3H
129
2.3%
F3'H/CYP75B
124
2.21%
BR6OX2/CYP85A2
111
1.98%
STR
106
1.89%
CYP71
84
1.5%
CODM/T6ODM
83
1.48%
SMT1/SMT2/SMT3
74
1.32%
IFR
69
1.23%
LAC
69
1.23%
CAD
62
1.1%
T16H
57
1.01%
CAS
55
0.98%
GS
52
0.93%
H6H
50
0.89%
PYKS
49
0.87%
TPS
49
0.87%
HCT
48
0.85%
GES
45
0.8%
TRI/TRII
44
0.78%
BBE
44
0.78%
CSE
42
0.75%
RAS
42
0.75%
7DLH
41
0.73%
TAT
41
0.73%
G8O/G8H
39
0.69%
CYP51G1
36
0.64%
CYP90D1
35
0.62%
PMT
34
0.61%
SLS
33
0.59%
ANR
33
0.59%
FNS
31
0.55%
IO
29
0.52%
F5H/CYP84A
29
0.52%
CCR
29
0.52%
NCS
27
0.48%
COMT
27
0.48%
8HGO
26
0.46%
BR6OX1/CYP85A1
26
0.46%
CPD/CYP90A1
25
0.45%
FPPS
23
0.41%
LAMT
21
0.37%
16OMT
20
0.36%
F3'5'H/CYP75A
20
0.36%
CNMT
19
0.34%
GGPPS
19
0.34%
SGD
15
0.27%
ANS/LDOX
15
0.27%
PAL
15
0.27%
CCoAOMT
15
0.27%
DXS
15
0.27%
PMK
15
0.27%
TYDC_DDC
14
0.25%
CHS
14
0.25%
CPR
14
0.25%
HMGR
13
0.23%
SQS/FDFT1
12
0.21%
ROT3/CYP90C1
12
0.21%
AACT
12
0.21%
MPO
11
0.2%
HPPR
11
0.2%
MVD
11
0.2%
DFR
10
0.18%
COR
9
0.16%
SMO1/SMO2
9
0.16%
CYP80B1
8
0.14%
FLS
8
0.14%
SQE
8
0.14%
ISY
7
0.12%
DET2
7
0.12%
MCT/IspD
7
0.12%
FK
5
0.09%
HDS/IspG
5
0.09%
HDR/IspH
5
0.09%
6OMT_4OMT_SOMT
4
0.07%
CYP719
4
0.07%
CYP80F1
4
0.07%
DWF1
4
0.07%
MVK
4
0.07%
IDI
4
0.07%
ADC
3
0.05%
CHI
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
CMK/IspE
3
0.05%
HMGS
3
0.05%
TDC
2
0.04%
DWF7
2
0.04%
HYD1
2
0.04%
DXR
2
0.04%
MDS/IspF
2
0.04%
XMT_MXMT_DXMT
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 685 | 19 | BAHD (284) | View species results |
| Phenylpropanoid pathway | 437 | 11 | POD (182) | View species results |
| Alkaloid pathway | 406 | 21 | NMT (94) | View species results |
| Flavonoid pathway | 263 | 13 | UFGT (168) | View species results |
| Rosmarinic acid pathway | 234 | 7 | C4H (111) | View species results |
| Steroid pathway | 137 | 14 | SMT1/SMT2/SMT3 (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2297 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 449 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Roff18070230120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18070230150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18160232990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18160233000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18160233010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18160233020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18450237940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18450237950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18940245020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff19050247190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff19050247240 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff19220249440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff19530253030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff19690255230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff20040257820 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff20670268280 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff20880271070 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff21220276310 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff21350280250 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff21350280780 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff21630287860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff22560303160 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff24080309830 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Roff24080309840 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Roff24150313380 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff24170314600 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff24470324430 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff24960328150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff25630343330 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff25630343340 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff26150348760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff26370352330 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Roff26370352340 | Alkaloid | STR | low | borderline | STR__00002__sp_P68175_STSY_RAUSE |
| Roff26870356190 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff27430361060 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3251050382480 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3251050382490 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3320940386040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3324860386600 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Roff3324860386610 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Roff3470820395250 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Roff3639060408980 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3852680443980 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3852680444070 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3886230455250 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3886230455260 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3886650455490 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3887820455880 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3900360463030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff3900360463040 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |