Rosmarinus officinalis (rosmarinus_officinalis)
Imported from atlas release summary for Rosmarinus officinalis.
2746
Candidate Protein Records
2162
Pathway-Level Records
5616
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
5616
Family-Level Calls
C4H
6.93%
BAHD
6.39%
C3'H/CYP98A
6.13%
4CL
4.33%
IFS
4.27%
T3O
4.04%
CYP76
4.01%
POD
3.47%
Other Families
60.43%
More Families (97)
UGT
194
3.45%
NMT
180
3.21%
7DLGT
179
3.19%
UFGT
179
3.19%
DWF4/CYP90B1
155
2.76%
F3H
129
2.3%
F3'H/CYP75B
124
2.21%
BR6OX2/CYP85A2
111
1.98%
STR
106
1.89%
CYP71
84
1.5%
CODM/T6ODM
83
1.48%
SMT1/SMT2/SMT3
74
1.32%
IFR
69
1.23%
LAC
69
1.23%
CAD
62
1.1%
T16H
57
1.01%
CAS
55
0.98%
GS
52
0.93%
H6H
50
0.89%
PYKS
49
0.87%
TPS
49
0.87%
HCT
48
0.85%
GES
45
0.8%
TRI/TRII
44
0.78%
BBE
44
0.78%
CSE
42
0.75%
RAS
42
0.75%
7DLH
41
0.73%
TAT
41
0.73%
G8O/G8H
39
0.69%
CYP51G1
36
0.64%
CYP90D1
35
0.62%
PMT
34
0.61%
SLS
33
0.59%
ANR
33
0.59%
FNS
31
0.55%
IO
29
0.52%
F5H/CYP84A
29
0.52%
CCR
29
0.52%
NCS
27
0.48%
COMT
27
0.48%
8HGO
26
0.46%
BR6OX1/CYP85A1
26
0.46%
CPD/CYP90A1
25
0.45%
FPPS
23
0.41%
LAMT
21
0.37%
16OMT
20
0.36%
F3'5'H/CYP75A
20
0.36%
CNMT
19
0.34%
GGPPS
19
0.34%
SGD
15
0.27%
ANS/LDOX
15
0.27%
PAL
15
0.27%
CCoAOMT
15
0.27%
DXS
15
0.27%
PMK
15
0.27%
TYDC_DDC
14
0.25%
CHS
14
0.25%
CPR
14
0.25%
HMGR
13
0.23%
SQS/FDFT1
12
0.21%
ROT3/CYP90C1
12
0.21%
AACT
12
0.21%
MPO
11
0.2%
HPPR
11
0.2%
MVD
11
0.2%
DFR
10
0.18%
COR
9
0.16%
SMO1/SMO2
9
0.16%
CYP80B1
8
0.14%
FLS
8
0.14%
SQE
8
0.14%
ISY
7
0.12%
DET2
7
0.12%
MCT/IspD
7
0.12%
FK
5
0.09%
HDS/IspG
5
0.09%
HDR/IspH
5
0.09%
6OMT_4OMT_SOMT
4
0.07%
CYP719
4
0.07%
CYP80F1
4
0.07%
DWF1
4
0.07%
MVK
4
0.07%
IDI
4
0.07%
ADC
3
0.05%
CHI
3
0.05%
CPI1
3
0.05%
DWF5
3
0.05%
CMK/IspE
3
0.05%
HMGS
3
0.05%
TDC
2
0.04%
DWF7
2
0.04%
HYD1
2
0.04%
DXR
2
0.04%
MDS/IspF
2
0.04%
XMT_MXMT_DXMT
1
0.02%
GPPS
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 685 | 19 | BAHD (284) | View species results |
| Phenylpropanoid pathway | 437 | 11 | POD (182) | View species results |
| Alkaloid pathway | 406 | 21 | NMT (94) | View species results |
| Flavonoid pathway | 263 | 13 | UFGT (168) | View species results |
| Rosmarinic acid pathway | 234 | 7 | C4H (111) | View species results |
| Steroid pathway | 137 | 14 | SMT1/SMT2/SMT3 (48) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2297 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 449 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Roff10510067960 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff10520071780 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Roff10590077320 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff10620080290 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff10620080300 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff10660081860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11520100530 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530107720 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530112990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530113850 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530113860 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530113870 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530116120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530116130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530116140 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530116150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530117400 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11530117410 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11790120990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11790122120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11970126760 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff11970126770 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff12260130990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff12260131000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff12350134020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff12680146230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff13310163080 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff13330165830 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Roff13330165840 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| Roff14510188650 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff15330198630 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff15360200460 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff15490206310 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff16590216130 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff17700225760 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18070230110 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18070230120 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18070230150 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18160232990 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18160233000 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18160233010 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18160233020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18450237940 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18450237950 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff18940245020 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff19050247190 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff19050247240 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff19220249440 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff19530253030 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| Roff19690255230 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |