Setaria viridis (setaria_viridis)
Imported from atlas release summary for Setaria viridis.
2604
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2604
Candidate Genes
C4H
6.2%
C3'H/CYP98A
6.07%
BAHD
5.41%
UGT
4.22%
POD
4.08%
UFGT
3.93%
7DLGT
3.85%
T3O
3.44%
Other Families
62.8%
More Families (98)
IFS
203
3.26%
CYP76
190
3.05%
4CL
177
2.84%
NMT
156
2.5%
DWF4/CYP90B1
155
2.49%
F3H
143
2.3%
F3'H/CYP75B
135
2.17%
BR6OX2/CYP85A2
127
2.04%
STR
122
1.96%
CYP71
118
1.89%
SMT1/SMT2/SMT3
112
1.8%
CAS
94
1.51%
CAD
87
1.4%
GGPPS
85
1.36%
LAC
82
1.32%
H6H
75
1.2%
TPS
70
1.12%
CCR
68
1.09%
ANR
66
1.06%
GES
65
1.04%
SLS
64
1.03%
COMT
62
1.0%
TRI/TRII
61
0.98%
PYKS
58
0.93%
SGD
57
0.92%
CODM/T6ODM
55
0.88%
G8O/G8H
55
0.88%
16OMT
52
0.83%
IFR
50
0.8%
RAS
50
0.8%
CSE
49
0.79%
PMT
48
0.77%
FNS
42
0.67%
HCT
42
0.67%
COR
40
0.64%
NCS
40
0.64%
T16H
39
0.63%
CPD/CYP90A1
39
0.63%
GS
38
0.61%
F3'5'H/CYP75A
35
0.56%
PAL
33
0.53%
CYP90D1
33
0.53%
TYDC_DDC
30
0.48%
TAT
30
0.48%
CHS
29
0.47%
DFR
25
0.4%
CYP51G1
24
0.39%
BBE
23
0.37%
CNMT
23
0.37%
BR6OX1/CYP85A1
23
0.37%
8HGO
20
0.32%
IO
19
0.31%
F5H/CYP84A
19
0.31%
CYP80B1
16
0.26%
LAMT
15
0.24%
FPPS
15
0.24%
AACT
14
0.22%
CPR
13
0.21%
HPPR
13
0.21%
7DLH
12
0.19%
DWF1
12
0.19%
TDC
10
0.16%
ROT3/CYP90C1
10
0.16%
CYP719
9
0.14%
ANS/LDOX
9
0.14%
SQS/FDFT1
9
0.14%
SMO1/SMO2
8
0.13%
6OMT_4OMT_SOMT
7
0.11%
CCoAOMT
7
0.11%
DET2
7
0.11%
GPPS
7
0.11%
ADC
6
0.1%
MVD
6
0.1%
MVK
6
0.1%
ISY
5
0.08%
CHI
5
0.08%
HMGR
5
0.08%
DXS
5
0.08%
MPO
4
0.06%
HYD1
4
0.06%
HMGS
4
0.06%
IDI
4
0.06%
MCT/IspD
4
0.06%
CYP80F1
2
0.03%
ODC
2
0.03%
XMT_MXMT_DXMT
2
0.03%
FLS
2
0.03%
FK
2
0.03%
MDS/IspF
2
0.03%
CMK/IspE
2
0.03%
HDR/IspH
2
0.03%
DWF5
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
SQE
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 700 | 19 | BAHD (255) | View species results |
| Alkaloid pathway | 608 | 20 | 7DLGT (134) | View species results |
| Phenylpropanoid pathway | 539 | 11 | POD (244) | View species results |
| Flavonoid pathway | 357 | 11 | UFGT (234) | View species results |
| Rosmarinic acid pathway | 231 | 7 | C4H (111) | View species results |
| Steroid pathway | 169 | 11 | CAS (73) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2305 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 429 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NMT
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Svir02G0020820.3 | Alkaloid | NMT | medium | pass | NMT__00066__sp_Q9SU94_ANM11_ARATH |
| Svir02G0021050.1 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Svir02G0021050.2 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Svir02G0021050.3 | Alkaloid | NMT | low | borderline | NMT__00046__sp_Q8VZ17_SUVH6_ARATH |
| Svir02G0022990.1 | Alkaloid | NMT | medium | pass | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Svir02G0030330.1 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Svir02G0030330.2 | Alkaloid | NMT | medium | borderline | NMT__00070__sp_W5U2K2_NMT_CATRO |
| Svir02G0034350.1 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Svir02G0034350.2 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Svir02G0034350.3 | Alkaloid | NMT | low | borderline | NMT__00024__sp_P0CB22_ATX2_ARATH |
| Svir02G0034350.4 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Svir02G0034350.5 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Svir02G0046120.1 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Svir02G0046120.2 | Alkaloid | NMT | medium | pass | NMT__00048__sp_Q8W595_SUVR4_ARATH |
| Svir02G0047810.1 | Alkaloid | NMT | medium | pass | NMT__00039__sp_Q84W92_ANM13_ARATH |
| Svir03G0001910.1 | Alkaloid | NMT | medium | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Svir03G0017650.1 | Alkaloid | NMT | medium | borderline | NMT__00045__sp_Q8VYX1_PEAM1_WHEAT |
| Svir03G0021720.1 | Alkaloid | NMT | medium | pass | NMT__00049__sp_Q93YF5_SUVH1_TOBAC |
| Svir03G0028580.1 | Alkaloid | NMT | medium | pass | NMT__00042__sp_Q8GZB6_SUVH4_ARATH |
| Svir03G0044470.1 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Svir03G0044470.2 | Alkaloid | NMT | low | borderline | NMT__00017__sp_F4K1J4_ATXR7_ARATH |
| Svir04G0000480.1 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Svir04G0000480.2 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Svir04G0000480.3 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Svir04G0000480.4 | Alkaloid | NMT | low | borderline | NMT__00023__sp_O82210_ANM12_ARATH |
| Svir04G0001910.1 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Svir04G0001910.2 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Svir04G0001910.3 | Alkaloid | NMT | low | borderline | NMT__00068__sp_Q9XI84_RBCMT_ARATH |
| Svir04G0003330.1 | Alkaloid | NMT | medium | pass | NMT__00060__sp_Q9MAT5_ANM10_ARATH |
| Svir04G0005010.1 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Svir04G0005010.2 | Alkaloid | NMT | low | borderline | NMT__00047__sp_Q8VZJ1_ATXR5_ARATH |
| Svir04G0006660.1 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| Svir04G0006660.2 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| Svir04G0006660.3 | Alkaloid | NMT | medium | pass | NMT__00034__sp_Q5VN06_CLF_ORYSJ |
| Svir04G0010350.1 | Alkaloid | NMT | medium | pass | NMT__00054__sp_Q9FF80_SUVH1_ARATH |
| Svir04G0014090.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Svir04G0014090.2 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Svir04G0014090.3 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Svir04G0014090.4 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Svir04G0015420.1 | Alkaloid | NMT | medium | borderline | NMT__00007__sp_A0A6C0WX00_CKTBS_CAMSB |
| Svir04G0015460.1 | Alkaloid | NMT | medium | borderline | NMT__00005__sp_A0A6C0WW36_CKTCS_CAMSB |
| Svir04G0032940.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Svir05G0013980.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Svir05G0016660.1 | Alkaloid | NMT | low | borderline | NMT__00035__sp_Q6K431_TRX1_ORYSJ |
| Svir05G0021760.1 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Svir05G0021760.2 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Svir05G0021760.3 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Svir05G0021760.4 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Svir05G0021760.5 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |
| Svir05G0021760.6 | Alkaloid | NMT | low | borderline | NMT__00056__sp_Q9FNE9_ATXR6_ARATH |