PlantSME Plant secondary metabolism enzyme database

Setaria viridis (setaria_viridis)

Imported from atlas release summary for Setaria viridis.

3029
Candidate Protein Records
2604
Pathway-Level Records
6228
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Current group 117
Eudicots
Site group 495
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Pathway Coverage
Terpenoid pathway 26.88% Alkaloid pathway 23.35% Phenylpropanoid pathway 20.7% Flavonoid pathway 13.71% Rosmarinic acid pathway 8.87% Steroid pathway 6.49%
Family Distribution
C4H 6.2% C3'H/CYP98A 6.07% BAHD 5.41% UGT 4.22% POD 4.08% UFGT 3.93% 7DLGT 3.85% T3O 3.44%
Other Families 62.8%
More Families (98)
IFS 203 3.26% CYP76 190 3.05% 4CL 177 2.84% NMT 156 2.5% DWF4/CYP90B1 155 2.49% F3H 143 2.3% F3'H/CYP75B 135 2.17% BR6OX2/CYP85A2 127 2.04% STR 122 1.96% CYP71 118 1.89% SMT1/SMT2/SMT3 112 1.8% CAS 94 1.51% CAD 87 1.4% GGPPS 85 1.36% LAC 82 1.32% H6H 75 1.2% TPS 70 1.12% CCR 68 1.09% ANR 66 1.06% GES 65 1.04% SLS 64 1.03% COMT 62 1.0% TRI/TRII 61 0.98% PYKS 58 0.93% SGD 57 0.92% CODM/T6ODM 55 0.88% G8O/G8H 55 0.88% 16OMT 52 0.83% IFR 50 0.8% RAS 50 0.8% CSE 49 0.79% PMT 48 0.77% FNS 42 0.67% HCT 42 0.67% COR 40 0.64% NCS 40 0.64% T16H 39 0.63% CPD/CYP90A1 39 0.63% GS 38 0.61% F3'5'H/CYP75A 35 0.56% PAL 33 0.53% CYP90D1 33 0.53% TYDC_DDC 30 0.48% TAT 30 0.48% CHS 29 0.47% DFR 25 0.4% CYP51G1 24 0.39% BBE 23 0.37% CNMT 23 0.37% BR6OX1/CYP85A1 23 0.37% 8HGO 20 0.32% IO 19 0.31% F5H/CYP84A 19 0.31% CYP80B1 16 0.26% LAMT 15 0.24% FPPS 15 0.24% AACT 14 0.22% CPR 13 0.21% HPPR 13 0.21% 7DLH 12 0.19% DWF1 12 0.19% TDC 10 0.16% ROT3/CYP90C1 10 0.16% CYP719 9 0.14% ANS/LDOX 9 0.14% SQS/FDFT1 9 0.14% SMO1/SMO2 8 0.13% 6OMT_4OMT_SOMT 7 0.11% CCoAOMT 7 0.11% DET2 7 0.11% GPPS 7 0.11% ADC 6 0.1% MVD 6 0.1% MVK 6 0.1% ISY 5 0.08% CHI 5 0.08% HMGR 5 0.08% DXS 5 0.08% MPO 4 0.06% HYD1 4 0.06% HMGS 4 0.06% IDI 4 0.06% MCT/IspD 4 0.06% CYP80F1 2 0.03% ODC 2 0.03% XMT_MXMT_DXMT 2 0.03% FLS 2 0.03% FK 2 0.03% MDS/IspF 2 0.03% CMK/IspE 2 0.03% HDR/IspH 2 0.03% DWF5 1 0.02% CPI1 1 0.02% DWF7 1 0.02% SQE 1 0.02% HDS/IspG 1 0.02% DXR 1 0.02% PMK 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 700 19 BAHD (255) View species results
Alkaloid pathway 608 20 7DLGT (134) View species results
Phenylpropanoid pathway 539 11 POD (244) View species results
Flavonoid pathway 357 11 UFGT (234) View species results
Rosmarinic acid pathway 231 7 C4H (111) View species results
Steroid pathway 169 11 CAS (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2305 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 429 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
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Protein/Isoform Record Pathway Family Confidence Status
Svir08G0027770.1 Alkaloid SGD low borderline
Svir09G0013680.1 Alkaloid SGD medium pass
Svir09G0013700.1 Alkaloid SGD medium pass
Svir09G0054280.1 Alkaloid SGD medium pass
Svir09G0054290.1 Alkaloid SGD medium pass
Svir09G0054290.2 Alkaloid SGD medium pass
Svir09G0054300.1 Alkaloid SGD medium pass