Setaria viridis (setaria_viridis)
Imported from atlas release summary for Setaria viridis.
3029
Candidate Protein Records
2604
Pathway-Level Records
6228
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
6228
Family-Level Calls
C4H
6.2%
C3'H/CYP98A
6.07%
BAHD
5.41%
UGT
4.22%
POD
4.08%
UFGT
3.93%
7DLGT
3.85%
T3O
3.44%
Other Families
62.8%
More Families (98)
IFS
203
3.26%
CYP76
190
3.05%
4CL
177
2.84%
NMT
156
2.5%
DWF4/CYP90B1
155
2.49%
F3H
143
2.3%
F3'H/CYP75B
135
2.17%
BR6OX2/CYP85A2
127
2.04%
STR
122
1.96%
CYP71
118
1.89%
SMT1/SMT2/SMT3
112
1.8%
CAS
94
1.51%
CAD
87
1.4%
GGPPS
85
1.36%
LAC
82
1.32%
H6H
75
1.2%
TPS
70
1.12%
CCR
68
1.09%
ANR
66
1.06%
GES
65
1.04%
SLS
64
1.03%
COMT
62
1.0%
TRI/TRII
61
0.98%
PYKS
58
0.93%
SGD
57
0.92%
CODM/T6ODM
55
0.88%
G8O/G8H
55
0.88%
16OMT
52
0.83%
IFR
50
0.8%
RAS
50
0.8%
CSE
49
0.79%
PMT
48
0.77%
FNS
42
0.67%
HCT
42
0.67%
COR
40
0.64%
NCS
40
0.64%
T16H
39
0.63%
CPD/CYP90A1
39
0.63%
GS
38
0.61%
F3'5'H/CYP75A
35
0.56%
PAL
33
0.53%
CYP90D1
33
0.53%
TYDC_DDC
30
0.48%
TAT
30
0.48%
CHS
29
0.47%
DFR
25
0.4%
CYP51G1
24
0.39%
BBE
23
0.37%
CNMT
23
0.37%
BR6OX1/CYP85A1
23
0.37%
8HGO
20
0.32%
IO
19
0.31%
F5H/CYP84A
19
0.31%
CYP80B1
16
0.26%
LAMT
15
0.24%
FPPS
15
0.24%
AACT
14
0.22%
CPR
13
0.21%
HPPR
13
0.21%
7DLH
12
0.19%
DWF1
12
0.19%
TDC
10
0.16%
ROT3/CYP90C1
10
0.16%
CYP719
9
0.14%
ANS/LDOX
9
0.14%
SQS/FDFT1
9
0.14%
SMO1/SMO2
8
0.13%
6OMT_4OMT_SOMT
7
0.11%
CCoAOMT
7
0.11%
DET2
7
0.11%
GPPS
7
0.11%
ADC
6
0.1%
MVD
6
0.1%
MVK
6
0.1%
ISY
5
0.08%
CHI
5
0.08%
HMGR
5
0.08%
DXS
5
0.08%
MPO
4
0.06%
HYD1
4
0.06%
HMGS
4
0.06%
IDI
4
0.06%
MCT/IspD
4
0.06%
CYP80F1
2
0.03%
ODC
2
0.03%
XMT_MXMT_DXMT
2
0.03%
FLS
2
0.03%
FK
2
0.03%
MDS/IspF
2
0.03%
CMK/IspE
2
0.03%
HDR/IspH
2
0.03%
DWF5
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
SQE
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 700 | 19 | BAHD (255) | View species results |
| Alkaloid pathway | 608 | 20 | 7DLGT (134) | View species results |
| Phenylpropanoid pathway | 539 | 11 | POD (244) | View species results |
| Flavonoid pathway | 357 | 11 | UFGT (234) | View species results |
| Rosmarinic acid pathway | 231 | 7 | C4H (111) | View species results |
| Steroid pathway | 169 | 11 | CAS (73) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2305 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 429 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SLS
| Protein/Isoform Record | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Svir07G0023570.4 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir07G0036460.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir08G0003710.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir08G0013910.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir09G0037370.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir09G0043110.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Svir09G0043120.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir09G0043130.1 | Alkaloid | SLS | medium | borderline | SLS__00002__sp_U5NDT8_SLS2_CATRO |
| Svir09G0043140.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir09G0043150.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir09G0043170.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir09G0046050.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir09G0053600.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |
| Svir09G0053610.1 | Alkaloid | SLS | medium | borderline | SLS__00001__sp_Q05047_SLS1_CATRO |