Setaria viridis (setaria_viridis)
Imported from atlas release summary for Setaria viridis.
2604
Family-Level Assignments
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2604
Family-Level Assignments
C4H
6.2%
C3'H/CYP98A
6.07%
BAHD
5.41%
UGT
4.22%
POD
4.08%
UFGT
3.93%
7DLGT
3.85%
T3O
3.44%
Other Families
62.8%
More Families (98)
IFS
203
3.26%
CYP76
190
3.05%
4CL
177
2.84%
NMT
156
2.5%
DWF4/CYP90B1
155
2.49%
F3H
143
2.3%
F3'H/CYP75B
135
2.17%
BR6OX2/CYP85A2
127
2.04%
STR
122
1.96%
CYP71
118
1.89%
SMT1/SMT2/SMT3
112
1.8%
CAS
94
1.51%
CAD
87
1.4%
GGPPS
85
1.36%
LAC
82
1.32%
H6H
75
1.2%
TPS
70
1.12%
CCR
68
1.09%
ANR
66
1.06%
GES
65
1.04%
SLS
64
1.03%
COMT
62
1.0%
TRI/TRII
61
0.98%
PYKS
58
0.93%
SGD
57
0.92%
CODM/T6ODM
55
0.88%
G8O/G8H
55
0.88%
16OMT
52
0.83%
IFR
50
0.8%
RAS
50
0.8%
CSE
49
0.79%
PMT
48
0.77%
FNS
42
0.67%
HCT
42
0.67%
COR
40
0.64%
NCS
40
0.64%
T16H
39
0.63%
CPD/CYP90A1
39
0.63%
GS
38
0.61%
F3'5'H/CYP75A
35
0.56%
PAL
33
0.53%
CYP90D1
33
0.53%
TYDC_DDC
30
0.48%
TAT
30
0.48%
CHS
29
0.47%
DFR
25
0.4%
CYP51G1
24
0.39%
BBE
23
0.37%
CNMT
23
0.37%
BR6OX1/CYP85A1
23
0.37%
8HGO
20
0.32%
IO
19
0.31%
F5H/CYP84A
19
0.31%
CYP80B1
16
0.26%
LAMT
15
0.24%
FPPS
15
0.24%
AACT
14
0.22%
CPR
13
0.21%
HPPR
13
0.21%
7DLH
12
0.19%
DWF1
12
0.19%
TDC
10
0.16%
ROT3/CYP90C1
10
0.16%
CYP719
9
0.14%
ANS/LDOX
9
0.14%
SQS/FDFT1
9
0.14%
SMO1/SMO2
8
0.13%
6OMT_4OMT_SOMT
7
0.11%
CCoAOMT
7
0.11%
DET2
7
0.11%
GPPS
7
0.11%
ADC
6
0.1%
MVD
6
0.1%
MVK
6
0.1%
ISY
5
0.08%
CHI
5
0.08%
HMGR
5
0.08%
DXS
5
0.08%
MPO
4
0.06%
HYD1
4
0.06%
HMGS
4
0.06%
IDI
4
0.06%
MCT/IspD
4
0.06%
CYP80F1
2
0.03%
ODC
2
0.03%
XMT_MXMT_DXMT
2
0.03%
FLS
2
0.03%
FK
2
0.03%
MDS/IspF
2
0.03%
CMK/IspE
2
0.03%
HDR/IspH
2
0.03%
DWF5
1
0.02%
CPI1
1
0.02%
DWF7
1
0.02%
SQE
1
0.02%
HDS/IspG
1
0.02%
DXR
1
0.02%
PMK
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Family-Level Assignments | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 700 | 19 | BAHD (255) | View species results |
| Alkaloid pathway | 608 | 20 | 7DLGT (134) | View species results |
| Phenylpropanoid pathway | 539 | 11 | POD (244) | View species results |
| Flavonoid pathway | 357 | 11 | UFGT (234) | View species results |
| Rosmarinic acid pathway | 231 | 7 | C4H (111) | View species results |
| Steroid pathway | 169 | 11 | CAS (73) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Family-level assignments | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2305 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 429 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Phenylpropanoid pathway
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| Svir01G0007220.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00010__sp_Q6ETN3_4CL3_ORYSJ |
| Svir01G0012270.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Svir01G0020010.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Svir01G0031740.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00008__sp_Q42982_4CL2_ORYSJ |
| Svir02G0017220.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Svir02G0021900.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Svir03G0001270.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00019__sp_Q9SMT7_4CLLA_ARATH |
| Svir03G0002080.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Svir03G0002110.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Svir03G0005810.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Svir03G0005810.2 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Svir03G0029240.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Svir03G0029240.2 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Svir03G0029260.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Svir03G0029260.2 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Svir04G0007390.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00007__sp_Q42524_4CL1_ARATH |
| Svir04G0016430.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00012__sp_Q84P21_4CLL5_ARATH |
| Svir04G0021720.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00009__sp_Q67W82_4CL4_ORYSJ |
| Svir05G0027350.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Svir05G0027350.2 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Svir05G0029740.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Svir05G0035690.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Svir05G0035690.2 | Phenylpropanoid | 4CL | low | borderline | 4CL__00018__sp_Q9S777_4CL3_ARATH |
| Svir05G0045670.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Svir06G0008560.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00017__sp_Q9S725_4CL2_ARATH |
| Svir06G0010740.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Svir06G0019460.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00011__sp_Q6ZAC1_4CL5_ORYSJ |
| Svir06G0026620.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00003__sp_M4ISH0_CCL1_HUMLU |
| Svir07G0005720.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00009__sp_Q67W82_4CL4_ORYSJ |
| Svir07G0010060.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00005__sp_P0C5B6_4CLL4_ARATH |
| Svir07G0033000.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Svir07G0033000.2 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Svir07G0036320.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Svir08G0003120.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Svir08G0005570.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Svir08G0005570.2 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Svir08G0005570.3 | Phenylpropanoid | 4CL | low | borderline | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Svir08G0012770.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Svir08G0012770.2 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Svir08G0017930.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00015__sp_Q9LU36_4CL4_ARATH |
| Svir09G0001480.1 | Phenylpropanoid | 4CL | low | borderline | 4CL__00006__sp_P17814_4CL1_ORYSJ |
| Svir09G0020190.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Svir09G0020200.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Svir09G0020200.2 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |
| Svir09G0020460.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Svir09G0020740.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00013__sp_Q84P23_4CLL9_ARATH |
| Svir09G0034270.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00014__sp_Q84P24_4CLL6_ARATH |
| Svir09G0047650.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Svir09G0047660.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00001__sp_I3PB36_CNL_PETHY |
| Svir09G0059160.1 | Phenylpropanoid | 4CL | medium | pass | 4CL__00016__sp_Q9M0X9_4CLL7_ARATH |