PlantSME Plant secondary metabolism enzyme database

Setaria viridis (setaria_viridis)

Imported from atlas release summary for Setaria viridis.

2604
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 700 19 BAHD (255) View species results
Alkaloid pathway 608 20 7DLGT (134) View species results
Phenylpropanoid pathway 539 11 POD (244) View species results
Flavonoid pathway 357 11 UFGT (234) View species results
Rosmarinic acid pathway 231 7 C4H (111) View species results
Steroid pathway 169 11 CAS (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2305 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 429 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Gene Pathway Family Confidence Status
Svir09G0041640.1 Alkaloid 16OMT medium borderline
Svir09G0041650.1 Alkaloid 16OMT medium borderline
Svir01G0005010.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
Svir02G0009830.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
Svir03G0000560.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
Svir03G0019810.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
Svir05G0013730.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
Svir07G0008660.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
Svir09G0029510.1 Alkaloid 6OMT_4OMT_SOMT medium borderline
Svir01G0002300.1 Alkaloid 7DLGT low borderline
Svir01G0002310.1 Alkaloid 7DLGT medium pass
Svir01G0002330.1 Alkaloid 7DLGT medium pass
Svir01G0004490.1 Alkaloid 7DLGT low borderline
Svir01G0004500.1 Alkaloid 7DLGT low borderline
Svir01G0004520.1 Alkaloid 7DLGT medium pass
Svir01G0004540.1 Alkaloid 7DLGT medium pass
Svir01G0004540.2 Alkaloid 7DLGT medium pass
Svir01G0004550.1 Alkaloid 7DLGT medium pass
Svir01G0006290.1 Alkaloid 7DLGT low borderline
Svir01G0009760.1 Alkaloid 7DLGT medium pass
Svir01G0013670.1 Alkaloid 7DLGT low borderline
Svir01G0013680.1 Alkaloid 7DLGT medium pass
Svir01G0013690.1 Alkaloid 7DLGT medium pass
Svir01G0013710.1 Alkaloid 7DLGT medium pass
Svir01G0013730.1 Alkaloid 7DLGT high pass
Svir01G0016850.1 Alkaloid 7DLGT medium pass
Svir01G0018350.1 Alkaloid 7DLGT medium pass
Svir01G0023380.1 Alkaloid 7DLGT high pass
Svir01G0023400.1 Alkaloid 7DLGT low borderline
Svir01G0023410.1 Alkaloid 7DLGT medium pass
Svir01G0024120.1 Alkaloid 7DLGT medium pass
Svir01G0027580.1 Alkaloid 7DLGT medium pass
Svir01G0034080.1 Alkaloid 7DLGT low borderline
Svir01G0036480.1 Alkaloid 7DLGT medium pass
Svir01G0036480.2 Alkaloid 7DLGT medium pass
Svir01G0036490.1 Alkaloid 7DLGT medium pass
Svir01G0036500.1 Alkaloid 7DLGT medium pass
Svir02G0001280.1 Alkaloid 7DLGT medium pass
Svir02G0001360.1 Alkaloid 7DLGT medium pass
Svir02G0001360.2 Alkaloid 7DLGT medium pass
Svir02G0004280.1 Alkaloid 7DLGT low borderline
Svir02G0006100.1 Alkaloid 7DLGT low borderline
Svir02G0008830.1 Alkaloid 7DLGT low borderline
Svir02G0008870.1 Alkaloid 7DLGT low borderline
Svir02G0010620.1 Alkaloid 7DLGT high pass
Svir02G0010670.1 Alkaloid 7DLGT medium pass
Svir02G0010690.1 Alkaloid 7DLGT medium pass
Svir02G0010710.1 Alkaloid 7DLGT medium pass
Svir02G0010710.2 Alkaloid 7DLGT medium pass
Svir02G0010750.1 Alkaloid 7DLGT medium pass