PlantSME Plant secondary metabolism enzyme database

Setaria viridis (setaria_viridis)

Imported from atlas release summary for Setaria viridis.

3029
Candidate Protein Records
2604
Pathway-Level Records
6228
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Monocots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (98)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 700 19 BAHD (255) View species results
Alkaloid pathway 608 20 7DLGT (134) View species results
Phenylpropanoid pathway 539 11 POD (244) View species results
Flavonoid pathway 357 11 UFGT (234) View species results
Rosmarinic acid pathway 231 7 C4H (111) View species results
Steroid pathway 169 11 CAS (73) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 2305 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 429 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
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Protein/Isoform Record Pathway Family Confidence Status
Svir04G0019180.2 Alkaloid PMT medium borderline
Svir04G0019180.3 Alkaloid PMT medium borderline
Svir04G0019180.4 Alkaloid PMT medium borderline
Svir04G0025710.1 Alkaloid PMT medium pass
Svir04G0025720.1 Alkaloid PMT medium pass
Svir04G0025720.2 Alkaloid PMT medium pass
Svir04G0031110.1 Alkaloid PMT medium pass
Svir04G0031120.1 Alkaloid PMT medium pass
Svir05G0003240.1 Alkaloid PMT medium pass
Svir05G0003260.1 Alkaloid PMT medium pass
Svir05G0003270.1 Alkaloid PMT medium pass
Svir05G0010800.1 Alkaloid PMT low borderline
Svir05G0013550.1 Alkaloid PMT medium pass
Svir05G0014180.1 Alkaloid PMT medium pass
Svir05G0024890.1 Alkaloid PMT medium pass
Svir05G0024910.1 Alkaloid PMT medium pass
Svir06G0019120.1 Alkaloid PMT low borderline
Svir07G0005670.1 Alkaloid PMT low borderline
Svir07G0026110.1 Alkaloid PMT low borderline
Svir07G0031620.1 Alkaloid PMT low borderline
Svir08G0023290.1 Alkaloid PMT medium pass
Svir09G0022080.1 Alkaloid PMT medium pass
Svir09G0027440.1 Alkaloid PMT low borderline
Svir09G0029870.1 Alkaloid PMT medium borderline
Svir09G0030080.1 Alkaloid PMT medium pass
Svir09G0033490.1 Alkaloid PMT medium pass
Svir09G0033500.1 Alkaloid PMT medium pass
Svir01G0004630.1 Alkaloid PYKS low borderline
Svir01G0034580.1 Alkaloid PYKS low borderline
Svir01G0040400.1 Alkaloid PYKS low borderline
Svir02G0002810.1 Alkaloid PYKS high pass
Svir02G0013060.1 Alkaloid PYKS medium pass
Svir02G0020890.1 Alkaloid PYKS low borderline
Svir02G0036430.1 Alkaloid PYKS high pass
Svir02G0036440.1 Alkaloid PYKS high pass
Svir02G0036460.1 Alkaloid PYKS high pass
Svir02G0036470.1 Alkaloid PYKS high pass
Svir03G0011570.1 Alkaloid PYKS low borderline
Svir03G0015150.1 Alkaloid PYKS low borderline
Svir03G0015690.1 Alkaloid PYKS low borderline
Svir04G0012910.1 Alkaloid PYKS low borderline
Svir04G0012920.1 Alkaloid PYKS low borderline
Svir04G0012940.1 Alkaloid PYKS low borderline
Svir04G0012960.1 Alkaloid PYKS low borderline
Svir04G0012960.2 Alkaloid PYKS low borderline
Svir04G0025570.1 Alkaloid PYKS low borderline
Svir05G0020690.1 Alkaloid PYKS low borderline
Svir05G0020700.1 Alkaloid PYKS low borderline
Svir05G0020710.1 Alkaloid PYKS low borderline
Svir07G0004340.1 Alkaloid PYKS high pass