PlantSME Plant secondary metabolism enzyme database

Sinapis alba (sinapis_alba)

Imported from atlas release summary for Sinapis alba.

2189
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.97% Alkaloid pathway 23.62% Phenylpropanoid pathway 21.43% Flavonoid pathway 10.19% Steroid pathway 7.67% Rosmarinic acid pathway 7.13%
Family Distribution
BAHD 6.86% C4H 6.18% C3'H/CYP98A 6.01% POD 4.52% CYP76 3.87% IFS 3.76% 4CL 3.38% F3H 3.11%
Other Families 62.32%
More Families (96)
UGT 161 3.07% T3O 157 2.99% UFGT 155 2.96% 7DLGT 153 2.92% DWF4/CYP90B1 148 2.82% NMT 140 2.67% F3'H/CYP75B 102 1.95% SGD 100 1.91% BR6OX2/CYP85A2 99 1.89% SMT1/SMT2/SMT3 97 1.85% STR 94 1.79% CODM/T6ODM 91 1.74% TRI/TRII 84 1.6% H6H 76 1.45% CYP71 76 1.45% CSE 62 1.18% CAS 59 1.13% CAD 55 1.05% T16H 52 0.99% PYKS 50 0.95% IFR 50 0.95% TPS 47 0.9% SLS 46 0.88% COMT 46 0.88% BBE 43 0.82% GES 41 0.78% ANR 41 0.78% CYP90D1 41 0.78% IO 39 0.74% LAC 39 0.74% RAS 37 0.71% G8O/G8H 31 0.59% FNS 31 0.59% 16OMT 30 0.57% LAMT 29 0.55% F5H/CYP84A 29 0.55% PAL 27 0.51% CCR 27 0.51% TAT 27 0.51% NCS 24 0.46% GS 24 0.46% HCT 22 0.42% CYP51G1 21 0.4% F3'5'H/CYP75A 20 0.38% BR6OX1/CYP85A1 20 0.38% 8HGO 19 0.36% 7DLH 19 0.36% CPD/CYP90A1 19 0.36% ROT3/CYP90C1 19 0.36% PMT 18 0.34% ANS/LDOX 18 0.34% CCoAOMT 17 0.32% CPR 17 0.32% FPPS 17 0.32% SQE 16 0.31% SQS/FDFT1 15 0.29% GGPPS 15 0.29% MPO 14 0.27% CNMT 13 0.25% AACT 13 0.25% COR 12 0.23% CHS 11 0.21% SMO1/SMO2 11 0.21% CYP719 9 0.17% MVD 9 0.17% ISY 7 0.13% CYP80B1 7 0.13% ADC 7 0.13% DFR 7 0.13% DWF7 7 0.13% TDC 6 0.11% CYP80F1 6 0.11% TYDC_DDC 6 0.11% DET2 6 0.11% MCT/IspD 6 0.11% IDI 5 0.1% MVK 5 0.1% HPPR 4 0.08% FK 4 0.08% CPI1 4 0.08% DXS 4 0.08% XMT_MXMT_DXMT 3 0.06% CHI 3 0.06% HYD1 3 0.06% DWF1 3 0.06% HMGR 3 0.06% MDS/IspF 3 0.06% DXR 3 0.06% PMK 3 0.06% DWF5 2 0.04% HMGS 2 0.04% ODC 1 0.02% FLS 1 0.02% HDS/IspG 1 0.02% CMK/IspE 1 0.02% HDR/IspH 1 0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 656 19 BAHD (311) View species results
Alkaloid pathway 517 19 SGD (95) View species results
Phenylpropanoid pathway 469 12 POD (231) View species results
Flavonoid pathway 223 8 UFGT (148) View species results
Steroid pathway 168 12 SMT1/SMT2/SMT3 (66) View species results
Rosmarinic acid pathway 156 7 C4H (68) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1999 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 419 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: HPPR
Reset
Gene Pathway Family Confidence Status Best Target
SalbSina_scaffold1710114910.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
SalbSina_scaffold1710114920.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
SalbSina_scaffold32330258370.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU
SalbSina_scaffold80451650.1 Rosmarinic Acid HPPR medium pass HPPR__00001__sp_Q65CJ7_HPPR_PLESU