Sinapis alba (sinapis_alba)
Imported from atlas release summary for Sinapis alba.
2189
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2189
Candidate Genes
BAHD
6.86%
C4H
6.18%
C3'H/CYP98A
6.01%
POD
4.52%
CYP76
3.87%
IFS
3.76%
4CL
3.38%
F3H
3.11%
Other Families
62.32%
More Families (96)
UGT
161
3.07%
T3O
157
2.99%
UFGT
155
2.96%
7DLGT
153
2.92%
DWF4/CYP90B1
148
2.82%
NMT
140
2.67%
F3'H/CYP75B
102
1.95%
SGD
100
1.91%
BR6OX2/CYP85A2
99
1.89%
SMT1/SMT2/SMT3
97
1.85%
STR
94
1.79%
CODM/T6ODM
91
1.74%
TRI/TRII
84
1.6%
H6H
76
1.45%
CYP71
76
1.45%
CSE
62
1.18%
CAS
59
1.13%
CAD
55
1.05%
T16H
52
0.99%
PYKS
50
0.95%
IFR
50
0.95%
TPS
47
0.9%
SLS
46
0.88%
COMT
46
0.88%
BBE
43
0.82%
GES
41
0.78%
ANR
41
0.78%
CYP90D1
41
0.78%
IO
39
0.74%
LAC
39
0.74%
RAS
37
0.71%
G8O/G8H
31
0.59%
FNS
31
0.59%
16OMT
30
0.57%
LAMT
29
0.55%
F5H/CYP84A
29
0.55%
PAL
27
0.51%
CCR
27
0.51%
TAT
27
0.51%
NCS
24
0.46%
GS
24
0.46%
HCT
22
0.42%
CYP51G1
21
0.4%
F3'5'H/CYP75A
20
0.38%
BR6OX1/CYP85A1
20
0.38%
8HGO
19
0.36%
7DLH
19
0.36%
CPD/CYP90A1
19
0.36%
ROT3/CYP90C1
19
0.36%
PMT
18
0.34%
ANS/LDOX
18
0.34%
CCoAOMT
17
0.32%
CPR
17
0.32%
FPPS
17
0.32%
SQE
16
0.31%
SQS/FDFT1
15
0.29%
GGPPS
15
0.29%
MPO
14
0.27%
CNMT
13
0.25%
AACT
13
0.25%
COR
12
0.23%
CHS
11
0.21%
SMO1/SMO2
11
0.21%
CYP719
9
0.17%
MVD
9
0.17%
ISY
7
0.13%
CYP80B1
7
0.13%
ADC
7
0.13%
DFR
7
0.13%
DWF7
7
0.13%
TDC
6
0.11%
CYP80F1
6
0.11%
TYDC_DDC
6
0.11%
DET2
6
0.11%
MCT/IspD
6
0.11%
IDI
5
0.1%
MVK
5
0.1%
HPPR
4
0.08%
FK
4
0.08%
CPI1
4
0.08%
DXS
4
0.08%
XMT_MXMT_DXMT
3
0.06%
CHI
3
0.06%
HYD1
3
0.06%
DWF1
3
0.06%
HMGR
3
0.06%
MDS/IspF
3
0.06%
DXR
3
0.06%
PMK
3
0.06%
DWF5
2
0.04%
HMGS
2
0.04%
ODC
1
0.02%
FLS
1
0.02%
HDS/IspG
1
0.02%
CMK/IspE
1
0.02%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 656 | 19 | BAHD (311) | View species results |
| Alkaloid pathway | 517 | 19 | SGD (95) | View species results |
| Phenylpropanoid pathway | 469 | 12 | POD (231) | View species results |
| Flavonoid pathway | 223 | 8 | UFGT (148) | View species results |
| Steroid pathway | 168 | 12 | SMT1/SMT2/SMT3 (66) | View species results |
| Rosmarinic acid pathway | 156 | 7 | C4H (68) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1999 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 419 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: STR
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| SalbSina_scaffold3070247550.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold31660253000.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold3210257020.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold3210257030.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold3340263600.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold340267870.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold340267890.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold360278230.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold3640280260.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold3640280270.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold3640280440.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold3640280440.2 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold3640280440.3 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold3640280440.4 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold3790288950.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold430315170.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold4360317990.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold450323810.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold4730335040.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold4760336610.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold4760336620.1 | Alkaloid | STR | low | borderline | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold4810338770.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold490341610.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold500348640.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold5360362390.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold5360362410.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| SalbSina_scaffold6080387740.1 | Alkaloid | STR | medium | pass | STR__00002__sp_P68175_STSY_RAUSE |
| SalbSina_scaffold6090387880.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold6090388250.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold6090388260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold6450402910.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold6650408490.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold6940416070.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold7380429090.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold74200431590.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold7470432240.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold7830444260.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold790446020.1 | Alkaloid | STR | medium | pass | STR__00003__sp_Q9M1B4_SSL13_ARATH |
| SalbSina_scaffold80451540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold90477540.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold9570490690.1 | Alkaloid | STR | medium | pass | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold9800494740.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold9800494760.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |
| SalbSina_scaffold9980497020.1 | Alkaloid | STR | low | borderline | STR__00001__sp_D3GE74_STR1_MEDTR |