PlantSME Plant secondary metabolism enzyme database

Amphicarpaea edgeworthii (amphicarpaea_edgeworthii)

Imported from atlas release summary for Amphicarpaea edgeworthii.

1419
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 29.53% Phenylpropanoid pathway 21.42% Alkaloid pathway 20.58% Flavonoid pathway 12.05% Rosmarinic acid pathway 8.95% Steroid pathway 7.47%
Family Distribution
C4H 7.05% C3'H/CYP98A 6.5% BAHD 5.05% T3O 4.24% CYP76 4.21% UGT 4.03% IFS 3.85% POD 3.8%
Other Families 61.27%
More Families (98)
4CL 141 3.67% 7DLGT 123 3.2% DWF4/CYP90B1 115 2.99% UFGT 105 2.73% F3'H/CYP75B 101 2.63% F3H 96 2.5% NMT 89 2.31% CYP71 69 1.79% BR6OX2/CYP85A2 63 1.64% CODM/T6ODM 62 1.61% SMT1/SMT2/SMT3 62 1.61% CAS 60 1.56% STR 57 1.48% H6H 56 1.46% COMT 46 1.2% CYP90D1 45 1.17% TPS 45 1.17% LAC 42 1.09% IFR 39 1.01% T16H 37 0.96% SGD 36 0.94% GES 36 0.94% CAD 34 0.88% PYKS 33 0.86% 16OMT 31 0.81% PMT 28 0.73% F5H/CYP84A 28 0.73% IO 27 0.7% HCT 27 0.7% CSE 27 0.7% RAS 25 0.65% TRI/TRII 24 0.62% 7DLH 23 0.6% ANS/LDOX 23 0.6% COR 22 0.57% G8O/G8H 22 0.57% F3'5'H/CYP75A 22 0.57% CCR 21 0.55% NCS 20 0.52% GS 20 0.52% FNS 20 0.52% PAL 18 0.47% CYP51G1 18 0.47% CPD/CYP90A1 18 0.47% BR6OX1/CYP85A1 17 0.44% ANR 16 0.42% SLS 15 0.39% CHS 15 0.39% MPO 14 0.36% 8HGO 13 0.34% TAT 13 0.34% DFR 12 0.31% CCoAOMT 11 0.29% CNMT 10 0.26% LAMT 9 0.23% CPR 8 0.21% SQS/FDFT1 8 0.21% GGPPS 8 0.21% CYP80B1 7 0.18% XMT_MXMT_DXMT 6 0.16% CYP719 6 0.16% CHI 6 0.16% ROT3/CYP90C1 6 0.16% DET2 6 0.16% ISY 5 0.13% FLS 5 0.13% SQE 5 0.13% MVD 5 0.13% MVK 5 0.13% DXS 5 0.13% BBE 4 0.1% HPPR 4 0.1% SMO1/SMO2 4 0.1% CMK/IspE 4 0.1% HMGR 4 0.1% AACT 4 0.1% TDC 3 0.08% TYDC_DDC 3 0.08% HYD1 3 0.08% MCT/IspD 3 0.08% HMGS 3 0.08% FPPS 3 0.08% 6OMT_4OMT_SOMT 2 0.05% DWF7 2 0.05% CPI1 2 0.05% DXR 2 0.05% IDI 2 0.05% HDR/IspH 2 0.05% CYP80F1 1 0.03% ADC 1 0.03% ODC 1 0.03% DWF5 1 0.03% DWF1 1 0.03% FK 1 0.03% PMK 1 0.03% HDS/IspG 1 0.03% MDS/IspF 1 0.03% GPPS 1 0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 419 19 BAHD (145) View species results
Phenylpropanoid pathway 304 12 POD (130) View species results
Alkaloid pathway 292 23 NMT (50) View species results
Flavonoid pathway 171 11 UFGT (86) View species results
Rosmarinic acid pathway 127 7 C4H (66) View species results
Steroid pathway 106 12 CAS (51) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1634 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 246 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: CYP80B1
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Gene Pathway Family Confidence Status Best Target
AedgHiC_scaffold_20084330 Alkaloid CYP80B1 medium borderline CYP80B1__00001__sp_I3V6B1_C80BX_PAPSO
AedgHiC_scaffold_20090960 Alkaloid CYP80B1 medium borderline CYP80B1__00001__sp_I3V6B1_C80BX_PAPSO
AedgHiC_scaffold_40151110 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
AedgHiC_scaffold_60192220 Alkaloid CYP80B1 medium pass CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
AedgHiC_scaffold_60192230 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
AedgHiC_scaffold_70216490 Alkaloid CYP80B1 medium borderline CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA
AedgHiC_scaffold_90278730 Alkaloid CYP80B1 medium pass CYP80B1__00003__sp_Q9FXW4_C80B2_COPJA