Amphicarpaea edgeworthii (amphicarpaea_edgeworthii)
Imported from atlas release summary for Amphicarpaea edgeworthii.
1419
Candidate Genes
106
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
1419
Candidate Genes
C4H
7.05%
C3'H/CYP98A
6.5%
BAHD
5.05%
T3O
4.24%
CYP76
4.21%
UGT
4.03%
IFS
3.85%
POD
3.8%
Other Families
61.27%
More Families (98)
4CL
141
3.67%
7DLGT
123
3.2%
DWF4/CYP90B1
115
2.99%
UFGT
105
2.73%
F3'H/CYP75B
101
2.63%
F3H
96
2.5%
NMT
89
2.31%
CYP71
69
1.79%
BR6OX2/CYP85A2
63
1.64%
CODM/T6ODM
62
1.61%
SMT1/SMT2/SMT3
62
1.61%
CAS
60
1.56%
STR
57
1.48%
H6H
56
1.46%
COMT
46
1.2%
CYP90D1
45
1.17%
TPS
45
1.17%
LAC
42
1.09%
IFR
39
1.01%
T16H
37
0.96%
SGD
36
0.94%
GES
36
0.94%
CAD
34
0.88%
PYKS
33
0.86%
16OMT
31
0.81%
PMT
28
0.73%
F5H/CYP84A
28
0.73%
IO
27
0.7%
HCT
27
0.7%
CSE
27
0.7%
RAS
25
0.65%
TRI/TRII
24
0.62%
7DLH
23
0.6%
ANS/LDOX
23
0.6%
COR
22
0.57%
G8O/G8H
22
0.57%
F3'5'H/CYP75A
22
0.57%
CCR
21
0.55%
NCS
20
0.52%
GS
20
0.52%
FNS
20
0.52%
PAL
18
0.47%
CYP51G1
18
0.47%
CPD/CYP90A1
18
0.47%
BR6OX1/CYP85A1
17
0.44%
ANR
16
0.42%
SLS
15
0.39%
CHS
15
0.39%
MPO
14
0.36%
8HGO
13
0.34%
TAT
13
0.34%
DFR
12
0.31%
CCoAOMT
11
0.29%
CNMT
10
0.26%
LAMT
9
0.23%
CPR
8
0.21%
SQS/FDFT1
8
0.21%
GGPPS
8
0.21%
CYP80B1
7
0.18%
XMT_MXMT_DXMT
6
0.16%
CYP719
6
0.16%
CHI
6
0.16%
ROT3/CYP90C1
6
0.16%
DET2
6
0.16%
ISY
5
0.13%
FLS
5
0.13%
SQE
5
0.13%
MVD
5
0.13%
MVK
5
0.13%
DXS
5
0.13%
BBE
4
0.1%
HPPR
4
0.1%
SMO1/SMO2
4
0.1%
CMK/IspE
4
0.1%
HMGR
4
0.1%
AACT
4
0.1%
TDC
3
0.08%
TYDC_DDC
3
0.08%
HYD1
3
0.08%
MCT/IspD
3
0.08%
HMGS
3
0.08%
FPPS
3
0.08%
6OMT_4OMT_SOMT
2
0.05%
DWF7
2
0.05%
CPI1
2
0.05%
DXR
2
0.05%
IDI
2
0.05%
HDR/IspH
2
0.05%
CYP80F1
1
0.03%
ADC
1
0.03%
ODC
1
0.03%
DWF5
1
0.03%
DWF1
1
0.03%
FK
1
0.03%
PMK
1
0.03%
HDS/IspG
1
0.03%
MDS/IspF
1
0.03%
GPPS
1
0.03%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 419 | 19 | BAHD (145) | View species results |
| Phenylpropanoid pathway | 304 | 12 | POD (130) | View species results |
| Alkaloid pathway | 292 | 23 | NMT (50) | View species results |
| Flavonoid pathway | 171 | 11 | UFGT (86) | View species results |
| Rosmarinic acid pathway | 127 | 7 | C4H (66) | View species results |
| Steroid pathway | 106 | 12 | CAS (51) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1634 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 246 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| AedgHiC_scaffold_10003280 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_10003290 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_10003300 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_100049590 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_10008240 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_10008250 | Alkaloid | SGD | low | borderline |
| AedgHiC_scaffold_10008260 | Alkaloid | SGD | low | borderline |
| AedgHiC_scaffold_10014950 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_10014960 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_110059810 | Alkaloid | SGD | low | borderline |
| AedgHiC_scaffold_50166250 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_50167060 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_50167070 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_60205330 | Alkaloid | SGD | low | borderline |
| AedgHiC_scaffold_60207330 | Alkaloid | SGD | low | borderline |
| AedgHiC_scaffold_70211440 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_70212720 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_70234050 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_70234060 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_80241540 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90263350 | Alkaloid | SGD | low | borderline |
| AedgHiC_scaffold_90263360 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90271910 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90271920 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90271930 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90271940 | Alkaloid | SGD | low | borderline |
| AedgHiC_scaffold_90271950 | Alkaloid | SGD | low | borderline |
| AedgHiC_scaffold_90271960 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90273260 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90273740 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90276940 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90276950 | Alkaloid | SGD | low | borderline |
| AedgHiC_scaffold_90276960 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90277050 | Alkaloid | SGD | low | borderline |
| AedgHiC_scaffold_90277060 | Alkaloid | SGD | medium | pass |
| AedgHiC_scaffold_90277070 | Alkaloid | SGD | medium | pass |