PlantSME Plant secondary metabolism enzyme database

Arabidopsis suecica (arabidopsis_suecica)

Imported from atlas release summary for Arabidopsis suecica.

2799
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Algae
Site group 29
Bryophytes
Site group 125
Lycophytes/Ferns
Site group 4
Gymnosperms
Site group 6
Basal angiosperms
Site group 13
Monocots
Site group 117
Eudicots
Current group 495
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
Terpenoid pathway 30.26% Alkaloid pathway 22.08% Phenylpropanoid pathway 20.72% Flavonoid pathway 11.36% Rosmarinic acid pathway 8.07% Steroid pathway 7.5%
Family Distribution
BAHD 6.56% C4H 6.13% C3'H/CYP98A 5.94% 4CL 4.32% POD 4.07% CYP76 3.89% IFS 3.71% UFGT 3.17%
Other Families 62.21%
More Families (96)
UGT 213 3.1% T3O 210 3.06% 7DLGT 207 3.01% NMT 189 2.75% F3H 184 2.68% DWF4/CYP90B1 176 2.56% BR6OX2/CYP85A2 138 2.01% F3'H/CYP75B 135 1.96% SMT1/SMT2/SMT3 134 1.95% SGD 124 1.8% STR 116 1.69% CYP71 112 1.63% CODM/T6ODM 103 1.5% CAS 91 1.32% CSE 90 1.31% H6H 89 1.3% TRI/TRII 88 1.28% CAD 87 1.27% IFR 72 1.05% T16H 70 1.02% TPS 68 0.99% GES 62 0.9% IO 61 0.89% BBE 60 0.87% PYKS 55 0.8% LAC 53 0.77% SLS 52 0.76% CYP90D1 52 0.76% FNS 49 0.71% ANR 49 0.71% RAS 47 0.68% TAT 46 0.67% F5H/CYP84A 45 0.65% LAMT 44 0.64% HCT 43 0.63% CCR 42 0.61% G8O/G8H 39 0.57% GS 39 0.57% COMT 39 0.57% CPD/CYP90A1 34 0.49% 8HGO 31 0.45% NCS 28 0.41% F3'5'H/CYP75A 27 0.39% PAL 27 0.39% CYP51G1 26 0.38% 7DLH 25 0.36% 16OMT 25 0.36% ANS/LDOX 24 0.35% BR6OX1/CYP85A1 24 0.35% GGPPS 24 0.35% CNMT 21 0.31% CPR 21 0.31% FPPS 19 0.28% PMT 18 0.26% ROT3/CYP90C1 18 0.26% COR 17 0.25% DFR 17 0.25% AACT 16 0.23% MPO 15 0.22% CCoAOMT 14 0.2% SQE 14 0.2% DXS 13 0.19% SMO1/SMO2 12 0.17% MCT/IspD 12 0.17% SQS/FDFT1 10 0.15% DWF7 10 0.15% CYP719 9 0.13% CHS 9 0.13% CMK/IspE 9 0.13% MVK 9 0.13% CYP80B1 8 0.12% CYP80F1 8 0.12% DXR 8 0.12% MVD 8 0.12% CHI 7 0.1% DET2 7 0.1% TYDC_DDC 6 0.09% ISY 6 0.09% FLS 6 0.09% HPPR 6 0.09% IDI 6 0.09% XMT_MXMT_DXMT 5 0.07% DWF1 5 0.07% HMGR 5 0.07% ADC 4 0.06% TDC 4 0.06% CPI1 3 0.04% FK 3 0.04% HYD1 3 0.04% HDS/IspG 3 0.04% MDS/IspF 3 0.04% PMK 3 0.04% DWF5 2 0.03% HDR/IspH 2 0.03% HMGS 2 0.03% 6OMT_4OMT_SOMT 1 0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 847 19 BAHD (382) View species results
Alkaloid pathway 618 19 SGD (119) View species results
Phenylpropanoid pathway 580 11 POD (265) View species results
Flavonoid pathway 318 12 UFGT (202) View species results
Rosmarinic acid pathway 226 7 C4H (90) View species results
Steroid pathway 210 13 SMT1/SMT2/SMT3 (85) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2620 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: COR
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Gene Pathway Family Confidence Status Best Target
ara_suecica_KAG7538901.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
ara_suecica_KAG7553712.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
ara_suecica_KAG7565591.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ara_suecica_KAG7574004.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
ara_suecica_KAG7574005.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ara_suecica_KAG7574007.1 Alkaloid COR medium pass COR__00005__sp_Q9SQ70_COR11_PAPSO
ara_suecica_KAG7588223.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ara_suecica_KAG7588224.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ara_suecica_KAG7588225.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ara_suecica_KAG7607752.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
ara_suecica_KAG7607753.1 Alkaloid COR medium pass COR__00001__sp_B9VRJ2_COR15_PAPSO
ara_suecica_KAG7613927.1 Alkaloid COR medium pass COR__00004__sp_Q9SQ69_COR12_PAPSO
ara_suecica_KAG7634330.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ara_suecica_KAG7643474.1 Alkaloid COR medium pass COR__00003__sp_Q9SQ68_COR13_PAPSO
ara_suecica_KAG7643475.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ara_suecica_KAG7643477.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO
ara_suecica_KAG7657910.1 Alkaloid COR medium pass COR__00002__sp_Q9SQ67_COR14_PAPSO