PlantSME Plant secondary metabolism enzyme database

Arabidopsis suecica (arabidopsis_suecica)

Imported from atlas release summary for Arabidopsis suecica.

2799
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 847 19 BAHD (382) View species results
Alkaloid pathway 618 19 SGD (119) View species results
Phenylpropanoid pathway 580 11 POD (265) View species results
Flavonoid pathway 318 12 UFGT (202) View species results
Rosmarinic acid pathway 226 7 C4H (90) View species results
Steroid pathway 210 13 SMT1/SMT2/SMT3 (85) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2620 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: GS
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Gene Pathway Family Confidence Status
ara_suecica_KAG7537572.1 Alkaloid GS medium pass
ara_suecica_KAG7538789.1 Alkaloid GS low borderline
ara_suecica_KAG7539065.1 Alkaloid GS medium pass
ara_suecica_KAG7544542.1 Alkaloid GS high pass
ara_suecica_KAG7544658.1 Alkaloid GS high pass
ara_suecica_KAG7545130.1 Alkaloid GS high pass
ara_suecica_KAG7546678.1 Alkaloid GS low borderline
ara_suecica_KAG7547899.1 Alkaloid GS low borderline
ara_suecica_KAG7548456.1 Alkaloid GS low borderline
ara_suecica_KAG7548883.1 Alkaloid GS low borderline
ara_suecica_KAG7555039.1 Alkaloid GS low borderline
ara_suecica_KAG7564606.1 Alkaloid GS low borderline
ara_suecica_KAG7564607.1 Alkaloid GS low borderline
ara_suecica_KAG7565921.1 Alkaloid GS low borderline
ara_suecica_KAG7571668.1 Alkaloid GS high pass
ara_suecica_KAG7582011.1 Alkaloid GS low borderline
ara_suecica_KAG7582547.1 Alkaloid GS high pass
ara_suecica_KAG7583978.1 Alkaloid GS high pass
ara_suecica_KAG7589896.1 Alkaloid GS high pass
ara_suecica_KAG7598105.1 Alkaloid GS low borderline
ara_suecica_KAG7612674.1 Alkaloid GS medium pass
ara_suecica_KAG7613811.1 Alkaloid GS low borderline
ara_suecica_KAG7614071.1 Alkaloid GS medium pass
ara_suecica_KAG7620260.1 Alkaloid GS low borderline
ara_suecica_KAG7621304.1 Alkaloid GS low borderline
ara_suecica_KAG7622828.1 Alkaloid GS high pass
ara_suecica_KAG7623287.1 Alkaloid GS high pass
ara_suecica_KAG7623288.1 Alkaloid GS high pass
ara_suecica_KAG7623289.1 Alkaloid GS high pass
ara_suecica_KAG7623446.1 Alkaloid GS high pass
ara_suecica_KAG7631302.1 Alkaloid GS low borderline
ara_suecica_KAG7631829.1 Alkaloid GS high pass
ara_suecica_KAG7633416.1 Alkaloid GS low borderline
ara_suecica_KAG7634642.1 Alkaloid GS low borderline
ara_suecica_KAG7641601.1 Alkaloid GS high pass
ara_suecica_KAG7641618.1 Alkaloid GS high pass
ara_suecica_KAG7643205.1 Alkaloid GS low borderline
ara_suecica_KAG7655334.1 Alkaloid GS low borderline
ara_suecica_KAG7659342.1 Alkaloid GS high pass