PlantSME Plant secondary metabolism enzyme database

Arabidopsis suecica (arabidopsis_suecica)

Imported from atlas release summary for Arabidopsis suecica.

2799
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 847 19 BAHD (382) View species results
Alkaloid pathway 618 19 SGD (119) View species results
Phenylpropanoid pathway 580 11 POD (265) View species results
Flavonoid pathway 318 12 UFGT (202) View species results
Rosmarinic acid pathway 226 7 C4H (90) View species results
Steroid pathway 210 13 SMT1/SMT2/SMT3 (85) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2620 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: NCS
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Gene Pathway Family Confidence Status Best Target
ara_suecica_KAG7536542.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7538358.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7547267.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7547269.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7564679.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7564680.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7564681.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7572305.1 Alkaloid NCS low borderline NCS__00005__sp_Q67A25_NCS_THLFG
ara_suecica_KAG7584414.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7584415.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7595564.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7598701.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7599262.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7613478.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7620757.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7620759.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7620761.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7621258.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7633485.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7633486.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7633487.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7633488.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7633828.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7633891.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7641335.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7652807.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7655911.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA
ara_suecica_KAG7656412.1 Alkaloid NCS medium borderline NCS__00001__sp_A2A1A0_NCS1_COPJA