PlantSME Plant secondary metabolism enzyme database

Arabidopsis suecica (arabidopsis_suecica)

Imported from atlas release summary for Arabidopsis suecica.

2799
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 847 19 BAHD (382) View species results
Alkaloid pathway 618 19 SGD (119) View species results
Phenylpropanoid pathway 580 11 POD (265) View species results
Flavonoid pathway 318 12 UFGT (202) View species results
Rosmarinic acid pathway 226 7 C4H (90) View species results
Steroid pathway 210 13 SMT1/SMT2/SMT3 (85) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2620 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PAL
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Gene Pathway Family Confidence Status Best Target
ara_suecica_KAG7554061.1 Flavonoid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
ara_suecica_KAG7554062.1 Flavonoid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
ara_suecica_KAG7565511.1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
ara_suecica_KAG7573902.1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
ara_suecica_KAG7581069.1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
ara_suecica_KAG7608061.1 Flavonoid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
ara_suecica_KAG7630716.1 Flavonoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
ara_suecica_KAG7634243.1 Flavonoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
ara_suecica_KAG7643388.1 Flavonoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
ara_suecica_KAG7554061.1 Phenylpropanoid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
ara_suecica_KAG7554062.1 Phenylpropanoid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
ara_suecica_KAG7565511.1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
ara_suecica_KAG7573902.1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
ara_suecica_KAG7581069.1 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
ara_suecica_KAG7608061.1 Phenylpropanoid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
ara_suecica_KAG7630716.1 Phenylpropanoid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
ara_suecica_KAG7634243.1 Phenylpropanoid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
ara_suecica_KAG7643388.1 Phenylpropanoid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
ara_suecica_KAG7554061.1 Rosmarinic Acid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
ara_suecica_KAG7554062.1 Rosmarinic Acid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
ara_suecica_KAG7565511.1 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
ara_suecica_KAG7573902.1 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH
ara_suecica_KAG7581069.1 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
ara_suecica_KAG7608061.1 Rosmarinic Acid PAL high pass PAL__00004__sp_P45725_PAL3_ARATH
ara_suecica_KAG7630716.1 Rosmarinic Acid PAL high pass PAL__00009__sp_Q9SS45_PAL4_ARATH
ara_suecica_KAG7634243.1 Rosmarinic Acid PAL high pass PAL__00003__sp_P45724_PAL2_ARATH
ara_suecica_KAG7643388.1 Rosmarinic Acid PAL high pass PAL__00002__sp_P35510_PAL1_ARATH