PlantSME Plant secondary metabolism enzyme database

Arabidopsis suecica (arabidopsis_suecica)

Imported from atlas release summary for Arabidopsis suecica.

2799
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (96)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 847 19 BAHD (382) View species results
Alkaloid pathway 618 19 SGD (119) View species results
Phenylpropanoid pathway 580 11 POD (265) View species results
Flavonoid pathway 318 12 UFGT (202) View species results
Rosmarinic acid pathway 226 7 C4H (90) View species results
Steroid pathway 210 13 SMT1/SMT2/SMT3 (85) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 2620 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 541 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IO
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Gene Pathway Family Confidence Status
ara_suecica_KAG7536433.1 Alkaloid IO low borderline
ara_suecica_KAG7536767.1 Alkaloid IO low borderline
ara_suecica_KAG7544620.1 Alkaloid IO medium pass
ara_suecica_KAG7544729.1 Alkaloid IO medium borderline
ara_suecica_KAG7544735.1 Alkaloid IO medium borderline
ara_suecica_KAG7545690.1 Alkaloid IO medium borderline
ara_suecica_KAG7546545.1 Alkaloid IO medium borderline
ara_suecica_KAG7546546.1 Alkaloid IO medium borderline
ara_suecica_KAG7547467.1 Alkaloid IO low borderline
ara_suecica_KAG7554108.1 Alkaloid IO medium borderline
ara_suecica_KAG7554183.1 Alkaloid IO high pass
ara_suecica_KAG7554395.1 Alkaloid IO medium borderline
ara_suecica_KAG7563601.1 Alkaloid IO medium borderline
ara_suecica_KAG7565477.1 Alkaloid IO medium borderline
ara_suecica_KAG7566645.1 Alkaloid IO medium borderline
ara_suecica_KAG7571735.1 Alkaloid IO medium pass
ara_suecica_KAG7571862.1 Alkaloid IO medium borderline
ara_suecica_KAG7571865.1 Alkaloid IO medium borderline
ara_suecica_KAG7571866.1 Alkaloid IO medium borderline
ara_suecica_KAG7572130.1 Alkaloid IO medium borderline
ara_suecica_KAG7572349.1 Alkaloid IO medium borderline
ara_suecica_KAG7572615.1 Alkaloid IO medium borderline
ara_suecica_KAG7581035.1 Alkaloid IO medium borderline
ara_suecica_KAG7589968.1 Alkaloid IO medium borderline
ara_suecica_KAG7590125.1 Alkaloid IO medium borderline
ara_suecica_KAG7590707.1 Alkaloid IO medium pass
ara_suecica_KAG7595517.1 Alkaloid IO medium borderline
ara_suecica_KAG7596697.1 Alkaloid IO medium borderline
ara_suecica_KAG7597242.1 Alkaloid IO medium borderline
ara_suecica_KAG7597243.1 Alkaloid IO medium borderline
ara_suecica_KAG7608116.1 Alkaloid IO medium borderline
ara_suecica_KAG7608183.1 Alkaloid IO high pass
ara_suecica_KAG7608383.1 Alkaloid IO medium borderline
ara_suecica_KAG7610882.1 Alkaloid IO medium borderline
ara_suecica_KAG7610901.1 Alkaloid IO low borderline
ara_suecica_KAG7620558.1 Alkaloid IO medium borderline
ara_suecica_KAG7620560.1 Alkaloid IO medium borderline
ara_suecica_KAG7620562.1 Alkaloid IO medium borderline
ara_suecica_KAG7620563.1 Alkaloid IO medium borderline
ara_suecica_KAG7620579.1 Alkaloid IO low borderline
ara_suecica_KAG7621432.1 Alkaloid IO medium borderline
ara_suecica_KAG7621434.1 Alkaloid IO medium borderline
ara_suecica_KAG7623217.1 Alkaloid IO medium borderline
ara_suecica_KAG7623223.1 Alkaloid IO medium borderline
ara_suecica_KAG7623513.1 Alkaloid IO medium pass
ara_suecica_KAG7630745.1 Alkaloid IO medium borderline
ara_suecica_KAG7633942.1 Alkaloid IO low borderline
ara_suecica_KAG7633943.1 Alkaloid IO low borderline
ara_suecica_KAG7634209.1 Alkaloid IO medium borderline
ara_suecica_KAG7635289.1 Alkaloid IO medium borderline