Arabidopsis suecica (arabidopsis_suecica)
Imported from atlas release summary for Arabidopsis suecica.
2799
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2799
Candidate Genes
BAHD
6.56%
C4H
6.13%
C3'H/CYP98A
5.94%
4CL
4.32%
POD
4.07%
CYP76
3.89%
IFS
3.71%
UFGT
3.17%
Other Families
62.21%
More Families (96)
UGT
213
3.1%
T3O
210
3.06%
7DLGT
207
3.01%
NMT
189
2.75%
F3H
184
2.68%
DWF4/CYP90B1
176
2.56%
BR6OX2/CYP85A2
138
2.01%
F3'H/CYP75B
135
1.96%
SMT1/SMT2/SMT3
134
1.95%
SGD
124
1.8%
STR
116
1.69%
CYP71
112
1.63%
CODM/T6ODM
103
1.5%
CAS
91
1.32%
CSE
90
1.31%
H6H
89
1.3%
TRI/TRII
88
1.28%
CAD
87
1.27%
IFR
72
1.05%
T16H
70
1.02%
TPS
68
0.99%
GES
62
0.9%
IO
61
0.89%
BBE
60
0.87%
PYKS
55
0.8%
LAC
53
0.77%
SLS
52
0.76%
CYP90D1
52
0.76%
FNS
49
0.71%
ANR
49
0.71%
RAS
47
0.68%
TAT
46
0.67%
F5H/CYP84A
45
0.65%
LAMT
44
0.64%
HCT
43
0.63%
CCR
42
0.61%
G8O/G8H
39
0.57%
GS
39
0.57%
COMT
39
0.57%
CPD/CYP90A1
34
0.49%
8HGO
31
0.45%
NCS
28
0.41%
F3'5'H/CYP75A
27
0.39%
PAL
27
0.39%
CYP51G1
26
0.38%
7DLH
25
0.36%
16OMT
25
0.36%
ANS/LDOX
24
0.35%
BR6OX1/CYP85A1
24
0.35%
GGPPS
24
0.35%
CNMT
21
0.31%
CPR
21
0.31%
FPPS
19
0.28%
PMT
18
0.26%
ROT3/CYP90C1
18
0.26%
COR
17
0.25%
DFR
17
0.25%
AACT
16
0.23%
MPO
15
0.22%
CCoAOMT
14
0.2%
SQE
14
0.2%
DXS
13
0.19%
SMO1/SMO2
12
0.17%
MCT/IspD
12
0.17%
SQS/FDFT1
10
0.15%
DWF7
10
0.15%
CYP719
9
0.13%
CHS
9
0.13%
CMK/IspE
9
0.13%
MVK
9
0.13%
CYP80B1
8
0.12%
CYP80F1
8
0.12%
DXR
8
0.12%
MVD
8
0.12%
CHI
7
0.1%
DET2
7
0.1%
TYDC_DDC
6
0.09%
ISY
6
0.09%
FLS
6
0.09%
HPPR
6
0.09%
IDI
6
0.09%
XMT_MXMT_DXMT
5
0.07%
DWF1
5
0.07%
HMGR
5
0.07%
ADC
4
0.06%
TDC
4
0.06%
CPI1
3
0.04%
FK
3
0.04%
HYD1
3
0.04%
HDS/IspG
3
0.04%
MDS/IspF
3
0.04%
PMK
3
0.04%
DWF5
2
0.03%
HDR/IspH
2
0.03%
HMGS
2
0.03%
6OMT_4OMT_SOMT
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 847 | 19 | BAHD (382) | View species results |
| Alkaloid pathway | 618 | 19 | SGD (119) | View species results |
| Phenylpropanoid pathway | 580 | 11 | POD (265) | View species results |
| Flavonoid pathway | 318 | 12 | UFGT (202) | View species results |
| Rosmarinic acid pathway | 226 | 7 | C4H (90) | View species results |
| Steroid pathway | 210 | 13 | SMT1/SMT2/SMT3 (85) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2620 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 541 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: PYKS
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| ara_suecica_KAG7536568.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7537194.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7545044.1 | Alkaloid | PYKS | high | pass |
| ara_suecica_KAG7545082.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7545083.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7545124.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7554095.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7555189.1 | Alkaloid | PYKS | high | pass |
| ara_suecica_KAG7556594.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7558156.1 | Alkaloid | PYKS | high | pass |
| ara_suecica_KAG7565380.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7572360.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7572522.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7572877.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7575165.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7581591.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7583881.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7583981.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7583983.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7587883.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7589390.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7589737.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7595412.1 | Alkaloid | PYKS | high | pass |
| ara_suecica_KAG7595526.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7595777.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7596200.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7597598.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7598316.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7608106.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7609123.1 | Alkaloid | PYKS | high | pass |
| ara_suecica_KAG7612273.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7612359.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7619071.1 | Alkaloid | PYKS | high | pass |
| ara_suecica_KAG7622831.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7622869.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7622870.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7622909.1 | Alkaloid | PYKS | high | pass |
| ara_suecica_KAG7630203.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7630710.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7634119.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7640863.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7640954.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7642113.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7642166.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7642408.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7644549.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7652659.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7652761.1 | Alkaloid | PYKS | high | pass |
| ara_suecica_KAG7653008.1 | Alkaloid | PYKS | low | borderline |
| ara_suecica_KAG7653447.1 | Alkaloid | PYKS | low | borderline |