Arabidopsis suecica (arabidopsis_suecica)
Imported from atlas release summary for Arabidopsis suecica.
2799
Candidate Genes
104
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2799
Candidate Genes
BAHD
6.56%
C4H
6.13%
C3'H/CYP98A
5.94%
4CL
4.32%
POD
4.07%
CYP76
3.89%
IFS
3.71%
UFGT
3.17%
Other Families
62.21%
More Families (96)
UGT
213
3.1%
T3O
210
3.06%
7DLGT
207
3.01%
NMT
189
2.75%
F3H
184
2.68%
DWF4/CYP90B1
176
2.56%
BR6OX2/CYP85A2
138
2.01%
F3'H/CYP75B
135
1.96%
SMT1/SMT2/SMT3
134
1.95%
SGD
124
1.8%
STR
116
1.69%
CYP71
112
1.63%
CODM/T6ODM
103
1.5%
CAS
91
1.32%
CSE
90
1.31%
H6H
89
1.3%
TRI/TRII
88
1.28%
CAD
87
1.27%
IFR
72
1.05%
T16H
70
1.02%
TPS
68
0.99%
GES
62
0.9%
IO
61
0.89%
BBE
60
0.87%
PYKS
55
0.8%
LAC
53
0.77%
SLS
52
0.76%
CYP90D1
52
0.76%
FNS
49
0.71%
ANR
49
0.71%
RAS
47
0.68%
TAT
46
0.67%
F5H/CYP84A
45
0.65%
LAMT
44
0.64%
HCT
43
0.63%
CCR
42
0.61%
G8O/G8H
39
0.57%
GS
39
0.57%
COMT
39
0.57%
CPD/CYP90A1
34
0.49%
8HGO
31
0.45%
NCS
28
0.41%
F3'5'H/CYP75A
27
0.39%
PAL
27
0.39%
CYP51G1
26
0.38%
7DLH
25
0.36%
16OMT
25
0.36%
ANS/LDOX
24
0.35%
BR6OX1/CYP85A1
24
0.35%
GGPPS
24
0.35%
CNMT
21
0.31%
CPR
21
0.31%
FPPS
19
0.28%
PMT
18
0.26%
ROT3/CYP90C1
18
0.26%
COR
17
0.25%
DFR
17
0.25%
AACT
16
0.23%
MPO
15
0.22%
CCoAOMT
14
0.2%
SQE
14
0.2%
DXS
13
0.19%
SMO1/SMO2
12
0.17%
MCT/IspD
12
0.17%
SQS/FDFT1
10
0.15%
DWF7
10
0.15%
CYP719
9
0.13%
CHS
9
0.13%
CMK/IspE
9
0.13%
MVK
9
0.13%
CYP80B1
8
0.12%
CYP80F1
8
0.12%
DXR
8
0.12%
MVD
8
0.12%
CHI
7
0.1%
DET2
7
0.1%
TYDC_DDC
6
0.09%
ISY
6
0.09%
FLS
6
0.09%
HPPR
6
0.09%
IDI
6
0.09%
XMT_MXMT_DXMT
5
0.07%
DWF1
5
0.07%
HMGR
5
0.07%
ADC
4
0.06%
TDC
4
0.06%
CPI1
3
0.04%
FK
3
0.04%
HYD1
3
0.04%
HDS/IspG
3
0.04%
MDS/IspF
3
0.04%
PMK
3
0.04%
DWF5
2
0.03%
HDR/IspH
2
0.03%
HMGS
2
0.03%
6OMT_4OMT_SOMT
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 847 | 19 | BAHD (382) | View species results |
| Alkaloid pathway | 618 | 19 | SGD (119) | View species results |
| Phenylpropanoid pathway | 580 | 11 | POD (265) | View species results |
| Flavonoid pathway | 318 | 12 | UFGT (202) | View species results |
| Rosmarinic acid pathway | 226 | 7 | C4H (90) | View species results |
| Steroid pathway | 210 | 13 | SMT1/SMT2/SMT3 (85) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2620 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 541 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: TRI/TRII
| Gene | Pathway | Family | Confidence | Status | Best Target |
|---|---|---|---|---|---|
| ara_suecica_KAG7619689.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |
| ara_suecica_KAG7620289.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| ara_suecica_KAG7629865.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| ara_suecica_KAG7630113.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| ara_suecica_KAG7632684.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| ara_suecica_KAG7632685.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| ara_suecica_KAG7632992.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| ara_suecica_KAG7632995.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| ara_suecica_KAG7633162.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| ara_suecica_KAG7633576.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| ara_suecica_KAG7634059.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| ara_suecica_KAG7641874.1 | Alkaloid | TRI/TRII | low | borderline | TRI_TRII__00005__sp_P50162_TRN1_DATST |
| ara_suecica_KAG7642455.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| ara_suecica_KAG7642456.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| ara_suecica_KAG7642457.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| ara_suecica_KAG7642458.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00006__sp_Q9ZW03_TRNH3_ARATH |
| ara_suecica_KAG7642465.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| ara_suecica_KAG7642467.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| ara_suecica_KAG7642468.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| ara_suecica_KAG7642469.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| ara_suecica_KAG7642470.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| ara_suecica_KAG7642471.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| ara_suecica_KAG7642472.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| ara_suecica_KAG7642473.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00008__sp_Q9ZW18_SAG13_ARATH |
| ara_suecica_KAG7642474.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| ara_suecica_KAG7642475.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00009__sp_Q9ZW19_TRNHC_ARATH |
| ara_suecica_KAG7642619.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| ara_suecica_KAG7643447.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| ara_suecica_KAG7643448.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00001__sp_A7DY56_TRN1_COCOF |
| ara_suecica_KAG7644603.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| ara_suecica_KAG7644604.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00002__sp_H9BFQ0_TPRL1_ERYCB |
| ara_suecica_KAG7644605.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| ara_suecica_KAG7644606.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| ara_suecica_KAG7653410.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| ara_suecica_KAG7653411.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| ara_suecica_KAG7656972.1 | Alkaloid | TRI/TRII | medium | borderline | TRI_TRII__00007__sp_Q9ZW16_TRNHA_ARATH |
| ara_suecica_KAG7657244.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00003__sp_H9BFQ1_TPRL2_ERYCB |
| ara_suecica_KAG7657524.1 | Alkaloid | TRI/TRII | medium | pass | TRI_TRII__00004__sp_H9BFQ2_TPRL3_ERYCB |