Arabidopsis suecica (arabidopsis_suecica)
Imported from atlas release summary for Arabidopsis suecica.
3434
Candidate Protein Records
2799
Pathway-Level Records
6872
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
- Download candidate protein FASTA for this species
Pathway Coverage
6
Pathways
Family Distribution
6872
Family-Level Calls
BAHD
6.56%
C4H
6.13%
C3'H/CYP98A
5.94%
4CL
4.32%
POD
4.07%
CYP76
3.89%
IFS
3.71%
UFGT
3.17%
Other Families
62.21%
More Families (96)
UGT
213
3.1%
T3O
210
3.06%
7DLGT
207
3.01%
NMT
189
2.75%
F3H
184
2.68%
DWF4/CYP90B1
176
2.56%
BR6OX2/CYP85A2
138
2.01%
F3'H/CYP75B
135
1.96%
SMT1/SMT2/SMT3
134
1.95%
SGD
124
1.8%
STR
116
1.69%
CYP71
112
1.63%
CODM/T6ODM
103
1.5%
CAS
91
1.32%
CSE
90
1.31%
H6H
89
1.3%
TRI/TRII
88
1.28%
CAD
87
1.27%
IFR
72
1.05%
T16H
70
1.02%
TPS
68
0.99%
GES
62
0.9%
IO
61
0.89%
BBE
60
0.87%
PYKS
55
0.8%
LAC
53
0.77%
SLS
52
0.76%
CYP90D1
52
0.76%
FNS
49
0.71%
ANR
49
0.71%
RAS
47
0.68%
TAT
46
0.67%
F5H/CYP84A
45
0.65%
LAMT
44
0.64%
HCT
43
0.63%
CCR
42
0.61%
G8O/G8H
39
0.57%
GS
39
0.57%
COMT
39
0.57%
CPD/CYP90A1
34
0.49%
8HGO
31
0.45%
NCS
28
0.41%
F3'5'H/CYP75A
27
0.39%
PAL
27
0.39%
CYP51G1
26
0.38%
7DLH
25
0.36%
16OMT
25
0.36%
ANS/LDOX
24
0.35%
BR6OX1/CYP85A1
24
0.35%
GGPPS
24
0.35%
CNMT
21
0.31%
CPR
21
0.31%
FPPS
19
0.28%
PMT
18
0.26%
ROT3/CYP90C1
18
0.26%
COR
17
0.25%
DFR
17
0.25%
AACT
16
0.23%
MPO
15
0.22%
CCoAOMT
14
0.2%
SQE
14
0.2%
DXS
13
0.19%
SMO1/SMO2
12
0.17%
MCT/IspD
12
0.17%
SQS/FDFT1
10
0.15%
DWF7
10
0.15%
CYP719
9
0.13%
CHS
9
0.13%
CMK/IspE
9
0.13%
MVK
9
0.13%
CYP80B1
8
0.12%
CYP80F1
8
0.12%
DXR
8
0.12%
MVD
8
0.12%
CHI
7
0.1%
DET2
7
0.1%
TYDC_DDC
6
0.09%
ISY
6
0.09%
FLS
6
0.09%
HPPR
6
0.09%
IDI
6
0.09%
XMT_MXMT_DXMT
5
0.07%
DWF1
5
0.07%
HMGR
5
0.07%
ADC
4
0.06%
TDC
4
0.06%
CPI1
3
0.04%
FK
3
0.04%
HYD1
3
0.04%
HDS/IspG
3
0.04%
MDS/IspF
3
0.04%
PMK
3
0.04%
DWF5
2
0.03%
HDR/IspH
2
0.03%
HMGS
2
0.03%
6OMT_4OMT_SOMT
1
0.01%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Pathway-Level Records | Detected Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 847 | 19 | BAHD (382) | View species results |
| Alkaloid pathway | 618 | 19 | SGD (119) | View species results |
| Phenylpropanoid pathway | 580 | 11 | POD (265) | View species results |
| Flavonoid pathway | 318 | 12 | UFGT (202) | View species results |
| Rosmarinic acid pathway | 226 | 7 | C4H (90) | View species results |
| Steroid pathway | 210 | 13 | SMT1/SMT2/SMT3 (85) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Detected families | Assignment calls | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 2620 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 541 | BAHD, HCT, RAS |
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Alkaloid pathway
| Protein/Isoform Record | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| ara_suecica_KAG7609987.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7611190.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7611191.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7611194.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7611195.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7612781.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7613722.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7621799.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7621992.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7631061.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7631463.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7632032.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7632033.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7632541.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7633098.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7634029.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7634030.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7634031.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7634136.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7634274.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7634279.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7634480.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7634481.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7634482.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7634484.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7634715.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7634716.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7634717.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7634718.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7635006.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7640159.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7640775.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7642200.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7642531.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7643316.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7643317.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7643383.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7643419.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7643427.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7643655.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7643898.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7643899.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7643941.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7653555.1 | Alkaloid | STR | medium | pass |
| ara_suecica_KAG7654373.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7654412.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7654670.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7656104.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7657149.1 | Alkaloid | STR | low | borderline |
| ara_suecica_KAG7657155.1 | Alkaloid | STR | low | borderline |