PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
Atha01G0000410.1 Alkaloid 7DLGT medium pass
Atha01G0000410.2 Alkaloid 7DLGT medium pass
Atha01G0000440.1 Alkaloid 7DLGT low borderline
Atha01G0000440.2 Alkaloid 7DLGT low borderline
Atha01G0004800.1 Alkaloid 7DLGT medium pass
Atha01G0004830.1 Alkaloid 7DLGT medium pass
Atha01G0004830.2 Alkaloid 7DLGT medium pass
Atha01G0004980.1 Alkaloid 7DLGT medium pass
Atha01G0004990.1 Alkaloid 7DLGT medium pass
Atha01G0005350.1 Alkaloid 7DLGT medium pass
Atha01G0006640.1 Alkaloid 7DLGT low borderline
Atha01G0006650.1 Alkaloid 7DLGT medium pass
Atha01G0006660.1 Alkaloid 7DLGT low borderline
Atha01G0010110.1 Alkaloid 7DLGT low borderline
Atha01G0022770.1 Alkaloid 7DLGT medium pass
Atha01G0022780.1 Alkaloid 7DLGT medium pass
Atha01G0022780.2 Alkaloid 7DLGT medium pass
Atha01G0022790.1 Alkaloid 7DLGT medium pass
Atha01G0022790.2 Alkaloid 7DLGT medium pass
Atha01G0022800.1 Alkaloid 7DLGT medium pass
Atha01G0022810.1 Alkaloid 7DLGT medium pass
Atha01G0024550.1 Alkaloid 7DLGT low borderline
Atha01G0030370.1 Alkaloid 7DLGT medium pass
Atha01G0031910.1 Alkaloid 7DLGT low borderline
Atha01G0041160.1 Alkaloid 7DLGT low borderline
Atha01G0041780.1 Alkaloid 7DLGT low borderline
Atha01G0054730.1 Alkaloid 7DLGT low borderline
Atha01G0054740.1 Alkaloid 7DLGT low borderline
Atha01G0064200.1 Alkaloid 7DLGT low borderline
Atha01G0068740.1 Alkaloid 7DLGT medium pass
Atha02G0008690.1 Alkaloid 7DLGT low borderline
Atha02G0008690.2 Alkaloid 7DLGT low borderline
Atha02G0008700.1 Alkaloid 7DLGT low borderline
Atha02G0008700.2 Alkaloid 7DLGT low borderline
Atha02G0009810.1 Alkaloid 7DLGT low borderline
Atha02G0009810.2 Alkaloid 7DLGT low borderline
Atha02G0009810.3 Alkaloid 7DLGT low borderline
Atha02G0009810.4 Alkaloid 7DLGT low borderline
Atha02G0011610.1 Alkaloid 7DLGT medium pass
Atha02G0011620.1 Alkaloid 7DLGT medium pass
Atha02G0015890.1 Alkaloid 7DLGT low borderline
Atha02G0016250.1 Alkaloid 7DLGT low borderline
Atha02G0016630.1 Alkaloid 7DLGT low borderline
Atha02G0016640.1 Alkaloid 7DLGT medium pass
Atha02G0019940.1 Alkaloid 7DLGT medium pass
Atha02G0021610.1 Alkaloid 7DLGT low borderline
Atha02G0023320.1 Alkaloid 7DLGT low borderline
Atha02G0023340.1 Alkaloid 7DLGT low borderline
Atha02G0023360.1 Alkaloid 7DLGT low borderline
Atha02G0023370.1 Alkaloid 7DLGT low borderline