PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: 7DLGT
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Protein/Isoform Record Pathway Family Confidence Status
Atha04G0014330.2 Alkaloid 7DLGT low borderline
Atha04G0014580.1 Alkaloid 7DLGT low borderline
Atha04G0014590.1 Alkaloid 7DLGT low borderline
Atha04G0014600.1 Alkaloid 7DLGT low borderline
Atha04G0014660.1 Alkaloid 7DLGT medium pass
Atha04G0028090.1 Alkaloid 7DLGT low borderline
Atha04G0028110.1 Alkaloid 7DLGT low borderline
Atha04G0035360.1 Alkaloid 7DLGT low borderline
Atha04G0035370.1 Alkaloid 7DLGT low borderline
Atha04G0035370.2 Alkaloid 7DLGT low borderline
Atha04G0035380.1 Alkaloid 7DLGT low borderline
Atha04G0038170.1 Alkaloid 7DLGT low borderline
Atha05G0002650.1 Alkaloid 7DLGT medium pass
Atha05G0005250.1 Alkaloid 7DLGT high pass
Atha05G0005260.1 Alkaloid 7DLGT high pass
Atha05G0005270.1 Alkaloid 7DLGT high pass
Atha05G0005280.1 Alkaloid 7DLGT high pass
Atha05G0005290.1 Alkaloid 7DLGT high pass
Atha05G0011920.1 Alkaloid 7DLGT low borderline
Atha05G0013920.1 Alkaloid 7DLGT low borderline
Atha05G0016240.1 Alkaloid 7DLGT low borderline
Atha05G0016250.1 Alkaloid 7DLGT high pass
Atha05G0016250.2 Alkaloid 7DLGT medium pass
Atha05G0016260.1 Alkaloid 7DLGT low borderline
Atha05G0025410.1 Alkaloid 7DLGT medium pass
Atha05G0031080.1 Alkaloid 7DLGT medium pass
Atha05G0031080.2 Alkaloid 7DLGT medium pass
Atha05G0031140.1 Alkaloid 7DLGT medium pass
Atha05G0031170.1 Alkaloid 7DLGT medium pass
Atha05G0044070.1 Alkaloid 7DLGT low borderline
Atha05G0048680.1 Alkaloid 7DLGT low borderline
Atha05G0048700.1 Alkaloid 7DLGT low borderline
Atha05G0048770.1 Alkaloid 7DLGT low borderline
Atha05G0054710.1 Alkaloid 7DLGT medium pass
Atha05G0054720.1 Alkaloid 7DLGT high pass
Atha05G0061010.1 Alkaloid 7DLGT low borderline
Atha05G0062300.1 Alkaloid 7DLGT medium pass