PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
Reset
Gene Pathway Family Confidence Status
Atha02G0039780.2 Rosmarinic Acid C4H low borderline
Atha02G0040410.1 Rosmarinic Acid C4H low borderline
Atha02G0040450.1 Rosmarinic Acid C4H low borderline
Atha02G0040460.1 Rosmarinic Acid C4H low borderline
Atha02G0040460.2 Rosmarinic Acid C4H low borderline
Atha02G0040460.3 Rosmarinic Acid C4H low borderline
Atha02G0040470.1 Rosmarinic Acid C4H low borderline
Atha02G0040480.1 Rosmarinic Acid C4H low borderline
Atha02G0040480.2 Rosmarinic Acid C4H medium pass
Atha02G0040480.3 Rosmarinic Acid C4H low borderline
Atha02G0041630.1 Rosmarinic Acid C4H low borderline
Atha02G0041940.1 Rosmarinic Acid C4H low borderline
Atha02G0041950.1 Rosmarinic Acid C4H low borderline
Atha02G0041950.2 Rosmarinic Acid C4H low borderline
Atha03G0002850.1 Rosmarinic Acid C4H low borderline
Atha03G0010250.1 Rosmarinic Acid C4H low borderline
Atha03G0010260.1 Rosmarinic Acid C4H low borderline
Atha03G0013880.1 Rosmarinic Acid C4H low borderline
Atha03G0013880.2 Rosmarinic Acid C4H low borderline
Atha03G0014940.1 Rosmarinic Acid C4H low borderline
Atha03G0014950.1 Rosmarinic Acid C4H low borderline
Atha03G0014960.1 Rosmarinic Acid C4H low borderline
Atha03G0014960.2 Rosmarinic Acid C4H low borderline
Atha03G0014970.1 Rosmarinic Acid C4H low borderline
Atha03G0014970.2 Rosmarinic Acid C4H low borderline
Atha03G0020100.1 Rosmarinic Acid C4H low borderline
Atha03G0020100.2 Rosmarinic Acid C4H low borderline
Atha03G0021010.1 Rosmarinic Acid C4H low borderline
Atha03G0021010.2 Rosmarinic Acid C4H low borderline
Atha03G0021010.3 Rosmarinic Acid C4H low borderline
Atha03G0021010.4 Rosmarinic Acid C4H low borderline
Atha03G0021010.5 Rosmarinic Acid C4H low borderline
Atha03G0021010.6 Rosmarinic Acid C4H low borderline
Atha03G0021020.1 Rosmarinic Acid C4H medium pass
Atha03G0021020.2 Rosmarinic Acid C4H low borderline
Atha03G0021030.1 Rosmarinic Acid C4H low borderline
Atha03G0021040.1 Rosmarinic Acid C4H low borderline
Atha03G0021050.1 Rosmarinic Acid C4H low borderline
Atha03G0021050.2 Rosmarinic Acid C4H low borderline
Atha03G0021050.3 Rosmarinic Acid C4H low borderline
Atha03G0021050.4 Rosmarinic Acid C4H low borderline
Atha03G0021060.1 Rosmarinic Acid C4H low borderline
Atha03G0021060.2 Rosmarinic Acid C4H low borderline
Atha03G0021070.1 Rosmarinic Acid C4H low borderline
Atha03G0021950.1 Rosmarinic Acid C4H low borderline
Atha03G0021960.1 Rosmarinic Acid C4H low borderline
Atha03G0021970.1 Rosmarinic Acid C4H low borderline
Atha03G0021980.1 Rosmarinic Acid C4H low borderline
Atha03G0021980.2 Rosmarinic Acid C4H low borderline
Atha03G0026730.1 Rosmarinic Acid C4H low borderline