PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Gene Pathway Family Confidence Status
Atha03G0026730.2 Rosmarinic Acid C4H low borderline
Atha03G0027770.1 Rosmarinic Acid C4H low borderline
Atha03G0027810.1 Rosmarinic Acid C4H medium pass
Atha03G0027820.1 Rosmarinic Acid C4H low borderline
Atha03G0027830.1 Rosmarinic Acid C4H medium pass
Atha03G0027840.1 Rosmarinic Acid C4H medium pass
Atha03G0027840.2 Rosmarinic Acid C4H medium pass
Atha03G0027850.1 Rosmarinic Acid C4H low borderline
Atha03G0027860.1 Rosmarinic Acid C4H medium pass
Atha03G0027870.1 Rosmarinic Acid C4H low borderline
Atha03G0027880.1 Rosmarinic Acid C4H medium pass
Atha03G0027890.1 Rosmarinic Acid C4H medium pass
Atha03G0027940.1 Rosmarinic Acid C4H medium pass
Atha03G0027950.1 Rosmarinic Acid C4H medium pass
Atha03G0027950.2 Rosmarinic Acid C4H medium pass
Atha03G0027960.1 Rosmarinic Acid C4H low borderline
Atha03G0027960.2 Rosmarinic Acid C4H low borderline
Atha03G0027970.1 Rosmarinic Acid C4H low borderline
Atha03G0027980.1 Rosmarinic Acid C4H low borderline
Atha03G0027990.1 Rosmarinic Acid C4H low borderline
Atha03G0028000.1 Rosmarinic Acid C4H low borderline
Atha03G0028590.1 Rosmarinic Acid C4H medium pass
Atha03G0030710.1 Rosmarinic Acid C4H medium pass
Atha03G0032050.1 Rosmarinic Acid C4H low borderline
Atha03G0032490.1 Rosmarinic Acid C4H low borderline
Atha03G0034230.1 Rosmarinic Acid C4H medium pass
Atha03G0035100.1 Rosmarinic Acid C4H low borderline
Atha03G0038540.1 Rosmarinic Acid C4H medium pass
Atha03G0038550.1 Rosmarinic Acid C4H low borderline
Atha03G0038560.1 Rosmarinic Acid C4H low borderline
Atha03G0038560.2 Rosmarinic Acid C4H low borderline
Atha03G0038570.1 Rosmarinic Acid C4H medium pass
Atha03G0038570.2 Rosmarinic Acid C4H medium pass
Atha03G0038590.1 Rosmarinic Acid C4H low borderline
Atha03G0038600.1 Rosmarinic Acid C4H medium pass
Atha03G0038840.1 Rosmarinic Acid C4H low borderline
Atha03G0041100.1 Rosmarinic Acid C4H low borderline
Atha03G0043530.1 Rosmarinic Acid C4H medium pass
Atha03G0043530.2 Rosmarinic Acid C4H low borderline
Atha03G0043880.1 Rosmarinic Acid C4H medium pass
Atha03G0043890.1 Rosmarinic Acid C4H low borderline
Atha03G0043910.1 Rosmarinic Acid C4H medium pass
Atha03G0043920.1 Rosmarinic Acid C4H low borderline
Atha03G0051920.1 Rosmarinic Acid C4H low borderline
Atha03G0051920.2 Rosmarinic Acid C4H low borderline
Atha03G0052870.1 Rosmarinic Acid C4H low borderline
Atha03G0052870.2 Rosmarinic Acid C4H low borderline
Atha04G0010710.1 Rosmarinic Acid C4H medium pass
Atha04G0010720.1 Rosmarinic Acid C4H medium pass
Atha04G0010730.1 Rosmarinic Acid C4H medium pass