PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: C4H
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Protein/Isoform Record Pathway Family Confidence Status
Atha05G0003890.1 Rosmarinic Acid C4H low borderline
Atha05G0003920.1 Rosmarinic Acid C4H low borderline
Atha05G0004570.1 Rosmarinic Acid C4H low borderline
Atha05G0004570.2 Rosmarinic Acid C4H low borderline
Atha05G0005070.1 Rosmarinic Acid C4H low borderline
Atha05G0005070.3 Rosmarinic Acid C4H low borderline
Atha05G0006350.1 Rosmarinic Acid C4H low borderline
Atha05G0006360.1 Rosmarinic Acid C4H low borderline
Atha05G0007510.1 Rosmarinic Acid C4H low borderline
Atha05G0007780.1 Rosmarinic Acid C4H low borderline
Atha05G0007780.2 Rosmarinic Acid C4H low borderline
Atha05G0009220.1 Rosmarinic Acid C4H medium pass
Atha05G0009900.1 Rosmarinic Acid C4H medium pass
Atha05G0009920.1 Rosmarinic Acid C4H low borderline
Atha05G0013480.1 Rosmarinic Acid C4H low borderline
Atha05G0013480.2 Rosmarinic Acid C4H low borderline
Atha05G0013480.4 Rosmarinic Acid C4H low borderline
Atha05G0024000.1 Rosmarinic Acid C4H low borderline
Atha05G0024000.2 Rosmarinic Acid C4H low borderline
Atha05G0024010.1 Rosmarinic Acid C4H low borderline
Atha05G0024050.1 Rosmarinic Acid C4H medium pass
Atha05G0024060.1 Rosmarinic Acid C4H medium pass
Atha05G0024060.2 Rosmarinic Acid C4H low borderline
Atha05G0024220.1 Rosmarinic Acid C4H low borderline
Atha05G0024230.1 Rosmarinic Acid C4H low borderline
Atha05G0024240.1 Rosmarinic Acid C4H medium pass
Atha05G0024280.1 Rosmarinic Acid C4H low borderline
Atha05G0024990.1 Rosmarinic Acid C4H low borderline
Atha05G0028970.1 Rosmarinic Acid C4H low borderline
Atha05G0029160.1 Rosmarinic Acid C4H low borderline
Atha05G0029320.1 Rosmarinic Acid C4H low borderline
Atha05G0029340.1 Rosmarinic Acid C4H low borderline
Atha05G0029430.1 Rosmarinic Acid C4H medium pass
Atha05G0029430.2 Rosmarinic Acid C4H medium pass
Atha05G0031670.1 Rosmarinic Acid C4H low borderline
Atha05G0036100.1 Rosmarinic Acid C4H low borderline
Atha05G0036110.1 Rosmarinic Acid C4H low borderline
Atha05G0038580.1 Rosmarinic Acid C4H low borderline
Atha05G0039340.1 Rosmarinic Acid C4H low borderline
Atha05G0039340.2 Rosmarinic Acid C4H low borderline
Atha05G0042200.1 Rosmarinic Acid C4H low borderline
Atha05G0042210.1 Rosmarinic Acid C4H low borderline
Atha05G0042210.2 Rosmarinic Acid C4H low borderline
Atha05G0042210.3 Rosmarinic Acid C4H low borderline
Atha05G0042210.4 Rosmarinic Acid C4H low borderline
Atha05G0042210.5 Rosmarinic Acid C4H low borderline
Atha05G0042210.6 Rosmarinic Acid C4H low borderline
Atha05G0042210.7 Rosmarinic Acid C4H low borderline
Atha05G0052210.1 Rosmarinic Acid C4H medium pass
Atha05G0052250.1 Rosmarinic Acid C4H low borderline