PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Atha01G0001470.2 Flavonoid F3H low borderline
Atha01G0002580.1 Flavonoid F3H medium borderline
Atha01G0002580.2 Flavonoid F3H medium borderline
Atha01G0002590.1 Flavonoid F3H medium borderline
Atha01G0002590.2 Flavonoid F3H medium borderline
Atha01G0003500.1 Flavonoid F3H medium borderline
Atha01G0003530.1 Flavonoid F3H medium borderline
Atha01G0003530.2 Flavonoid F3H medium borderline
Atha01G0004240.1 Flavonoid F3H medium borderline
Atha01G0006000.1 Flavonoid F3H medium borderline
Atha01G0006000.2 Flavonoid F3H medium borderline
Atha01G0006020.1 Flavonoid F3H medium borderline
Atha01G0006020.2 Flavonoid F3H medium borderline
Atha01G0006020.3 Flavonoid F3H medium borderline
Atha01G0006030.1 Flavonoid F3H medium borderline
Atha01G0006040.1 Flavonoid F3H medium borderline
Atha01G0006040.2 Flavonoid F3H medium borderline
Atha01G0011940.1 Flavonoid F3H medium borderline
Atha01G0014160.1 Flavonoid F3H low borderline
Atha01G0017210.1 Flavonoid F3H medium borderline
Atha01G0017220.1 Flavonoid F3H medium borderline
Atha01G0027970.1 Flavonoid F3H low borderline
Atha01G0034740.1 Flavonoid F3H low borderline
Atha01G0034740.2 Flavonoid F3H low borderline
Atha01G0036860.1 Flavonoid F3H medium borderline
Atha01G0040030.1 Flavonoid F3H medium borderline
Atha01G0040030.2 Flavonoid F3H medium borderline
Atha01G0043480.1 Flavonoid F3H low borderline
Atha01G0043490.1 Flavonoid F3H low borderline
Atha01G0043510.1 Flavonoid F3H low borderline
Atha01G0043510.2 Flavonoid F3H low borderline
Atha01G0046220.1 Flavonoid F3H medium borderline
Atha01G0050430.1 Flavonoid F3H medium borderline
Atha01G0052010.1 Flavonoid F3H medium borderline
Atha01G0067760.1 Flavonoid F3H medium borderline
Atha01G0068890.1 Flavonoid F3H medium borderline
Atha01G0069010.1 Flavonoid F3H medium borderline
Atha01G0069010.2 Flavonoid F3H medium borderline
Atha01G0070870.1 Flavonoid F3H low borderline
Atha02G0004960.1 Flavonoid F3H low borderline
Atha02G0012650.1 Flavonoid F3H medium borderline
Atha02G0018870.1 Flavonoid F3H medium borderline
Atha02G0024500.1 Flavonoid F3H medium borderline
Atha02G0024510.1 Flavonoid F3H medium borderline
Atha02G0024510.3 Flavonoid F3H medium borderline
Atha02G0030860.1 Flavonoid F3H medium borderline
Atha02G0030860.2 Flavonoid F3H medium borderline
Atha02G0032530.1 Flavonoid F3H medium borderline
Atha02G0039690.1 Flavonoid F3H medium borderline
Atha03G0010960.1 Flavonoid F3H medium borderline