PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Atha03G0010960.2 Flavonoid F3H medium borderline
Atha03G0012790.1 Flavonoid F3H medium borderline
Atha03G0013710.1 Flavonoid F3H medium borderline
Atha03G0019810.1 Flavonoid F3H medium borderline
Atha03G0019810.2 Flavonoid F3H medium borderline
Atha03G0019820.1 Flavonoid F3H medium borderline
Atha03G0019820.2 Flavonoid F3H medium borderline
Atha03G0019820.3 Flavonoid F3H medium borderline
Atha03G0019820.4 Flavonoid F3H medium borderline
Atha03G0022500.1 Flavonoid F3H medium borderline
Atha03G0036660.1 Flavonoid F3H low borderline
Atha03G0036670.1 Flavonoid F3H low borderline
Atha03G0036670.2 Flavonoid F3H low borderline
Atha03G0036680.1 Flavonoid F3H low borderline
Atha03G0036680.2 Flavonoid F3H low borderline
Atha03G0036680.3 Flavonoid F3H low borderline
Atha03G0036680.4 Flavonoid F3H low borderline
Atha03G0036680.5 Flavonoid F3H low borderline
Atha03G0036680.6 Flavonoid F3H low borderline
Atha03G0036680.7 Flavonoid F3H low borderline
Atha03G0036680.8 Flavonoid F3H low borderline
Atha03G0036680.9 Flavonoid F3H low borderline
Atha03G0037440.1 Flavonoid F3H low borderline
Atha03G0040010.1 Flavonoid F3H low borderline
Atha03G0040020.1 Flavonoid F3H low borderline
Atha03G0040020.2 Flavonoid F3H low borderline
Atha03G0040020.3 Flavonoid F3H low borderline
Atha03G0040660.1 Flavonoid F3H low borderline
Atha03G0040660.2 Flavonoid F3H low borderline
Atha03G0040660.3 Flavonoid F3H low borderline
Atha03G0040660.4 Flavonoid F3H low borderline
Atha03G0041710.1 Flavonoid F3H medium borderline
Atha03G0041710.2 Flavonoid F3H medium borderline
Atha03G0046740.1 Flavonoid F3H medium borderline
Atha03G0046740.2 Flavonoid F3H medium borderline
Atha03G0051150.1 Flavonoid F3H medium borderline
Atha03G0052340.1 Flavonoid F3H medium borderline
Atha03G0052340.2 Flavonoid F3H medium borderline
Atha04G0003600.1 Flavonoid F3H low borderline
Atha04G0008810.1 Flavonoid F3H medium borderline
Atha04G0008820.1 Flavonoid F3H medium borderline
Atha04G0015630.1 Flavonoid F3H medium borderline
Atha04G0015630.2 Flavonoid F3H medium borderline
Atha04G0016190.1 Flavonoid F3H medium pass
Atha04G0016190.2 Flavonoid F3H medium pass
Atha04G0016190.3 Flavonoid F3H medium pass
Atha04G0016190.4 Flavonoid F3H medium pass
Atha04G0016190.5 Flavonoid F3H medium pass
Atha04G0016190.6 Flavonoid F3H low borderline
Atha04G0016200.1 Flavonoid F3H low borderline