PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: F3H
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Gene Pathway Family Confidence Status
Atha04G0021090.1 Flavonoid F3H medium borderline
Atha04G0021630.1 Flavonoid F3H medium pass
Atha04G0023040.1 Flavonoid F3H medium borderline
Atha04G0023040.2 Flavonoid F3H medium borderline
Atha04G0023040.3 Flavonoid F3H medium borderline
Atha04G0023520.1 Flavonoid F3H medium pass
Atha04G0023520.2 Flavonoid F3H medium pass
Atha04G0025670.1 Flavonoid F3H medium borderline
Atha04G0025670.2 Flavonoid F3H medium borderline
Atha04G0025680.1 Flavonoid F3H medium borderline
Atha04G0025680.2 Flavonoid F3H medium borderline
Atha04G0025800.1 Flavonoid F3H medium borderline
Atha04G0025800.2 Flavonoid F3H medium borderline
Atha05G0004940.1 Flavonoid F3H medium borderline
Atha05G0004940.2 Flavonoid F3H medium borderline
Atha05G0006680.1 Flavonoid F3H medium borderline
Atha05G0006980.1 Flavonoid F3H medium borderline
Atha05G0006980.2 Flavonoid F3H medium borderline
Atha05G0008250.1 Flavonoid F3H medium borderline
Atha05G0008250.2 Flavonoid F3H medium borderline
Atha05G0011650.1 Flavonoid F3H medium borderline
Atha05G0019930.1 Flavonoid F3H medium borderline
Atha05G0020080.1 Flavonoid F3H medium borderline
Atha05G0023630.1 Flavonoid F3H medium borderline
Atha05G0037140.1 Flavonoid F3H medium borderline
Atha05G0037140.2 Flavonoid F3H medium borderline
Atha05G0037150.1 Flavonoid F3H medium borderline
Atha05G0037150.2 Flavonoid F3H medium borderline
Atha05G0037700.1 Flavonoid F3H medium borderline
Atha05G0041720.1 Flavonoid F3H low borderline
Atha05G0045790.1 Flavonoid F3H low borderline
Atha05G0046330.1 Flavonoid F3H medium borderline
Atha05G0048690.1 Flavonoid F3H medium borderline
Atha05G0048690.2 Flavonoid F3H medium borderline
Atha05G0054660.1 Flavonoid F3H medium borderline
Atha05G0054670.1 Flavonoid F3H medium borderline
Atha05G0054670.2 Flavonoid F3H medium borderline
Atha05G0058880.1 Flavonoid F3H medium borderline
Atha05G0058880.2 Flavonoid F3H medium borderline
Atha05G0058890.1 Flavonoid F3H medium borderline
Atha05G0058900.1 Flavonoid F3H medium borderline
Atha05G0058910.1 Flavonoid F3H medium borderline
Atha05G0058910.2 Flavonoid F3H medium borderline