PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: H6H
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Gene Pathway Family Confidence Status
Atha01G0002580.1 Alkaloid H6H medium borderline
Atha01G0003530.1 Alkaloid H6H medium pass
Atha01G0003530.2 Alkaloid H6H high pass
Atha01G0006040.2 Alkaloid H6H medium borderline
Atha01G0011940.1 Alkaloid H6H medium borderline
Atha01G0014150.1 Alkaloid H6H low borderline
Atha01G0014150.2 Alkaloid H6H low borderline
Atha01G0014150.3 Alkaloid H6H low borderline
Atha01G0014160.1 Alkaloid H6H low borderline
Atha01G0015720.1 Alkaloid H6H low borderline
Atha01G0015720.2 Alkaloid H6H low borderline
Atha01G0015720.3 Alkaloid H6H low borderline
Atha01G0015720.4 Alkaloid H6H low borderline
Atha01G0027970.1 Alkaloid H6H low borderline
Atha01G0038580.1 Alkaloid H6H low borderline
Atha01G0043480.1 Alkaloid H6H low borderline
Atha01G0043490.1 Alkaloid H6H low borderline
Atha01G0043500.1 Alkaloid H6H low borderline
Atha01G0043510.1 Alkaloid H6H low borderline
Atha01G0043510.2 Alkaloid H6H low borderline
Atha01G0067760.1 Alkaloid H6H medium borderline
Atha01G0070270.1 Alkaloid H6H low borderline
Atha01G0070270.2 Alkaloid H6H low borderline
Atha01G0070860.1 Alkaloid H6H low borderline
Atha02G0004960.1 Alkaloid H6H low borderline
Atha02G0018870.1 Alkaloid H6H medium pass
Atha02G0032530.1 Alkaloid H6H medium borderline
Atha03G0010920.1 Alkaloid H6H low borderline
Atha03G0010960.1 Alkaloid H6H medium borderline
Atha03G0010960.2 Alkaloid H6H medium borderline
Atha03G0022500.1 Alkaloid H6H medium borderline
Atha03G0037440.1 Alkaloid H6H low borderline
Atha03G0041710.1 Alkaloid H6H high pass
Atha03G0041710.2 Alkaloid H6H high pass
Atha03G0054360.1 Alkaloid H6H low borderline
Atha03G0054360.2 Alkaloid H6H low borderline
Atha04G0003590.1 Alkaloid H6H low borderline
Atha04G0003590.2 Alkaloid H6H low borderline
Atha04G0003600.1 Alkaloid H6H low borderline
Atha04G0008810.1 Alkaloid H6H medium borderline
Atha04G0021630.1 Alkaloid H6H medium pass
Atha04G0023520.1 Alkaloid H6H low borderline
Atha04G0023520.2 Alkaloid H6H low borderline
Atha05G0008250.1 Alkaloid H6H medium borderline
Atha05G0008250.2 Alkaloid H6H medium borderline
Atha05G0023630.1 Alkaloid H6H medium borderline
Atha05G0037140.1 Alkaloid H6H high pass
Atha05G0037140.2 Alkaloid H6H high pass
Atha05G0045790.1 Alkaloid H6H low borderline
Atha05G0046330.2 Alkaloid H6H low borderline