PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFR
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Protein/Isoform Record Pathway Family Confidence Status
Atha01G0008920.1 Flavonoid IFR low borderline
Atha01G0008920.2 Flavonoid IFR low borderline
Atha01G0016890.1 Flavonoid IFR low borderline
Atha01G0016890.2 Flavonoid IFR low borderline
Atha01G0016890.3 Flavonoid IFR low borderline
Atha01G0019840.1 Flavonoid IFR high pass
Atha01G0019840.2 Flavonoid IFR high pass
Atha01G0031980.1 Flavonoid IFR high pass
Atha01G0032100.1 Flavonoid IFR low borderline
Atha01G0054210.1 Flavonoid IFR low borderline
Atha01G0065660.1 Flavonoid IFR high pass
Atha01G0065670.1 Flavonoid IFR high pass
Atha01G0065670.2 Flavonoid IFR high pass
Atha01G0065680.1 Flavonoid IFR high pass
Atha02G0013410.1 Flavonoid IFR low borderline
Atha02G0028510.1 Flavonoid IFR low borderline
Atha02G0031920.1 Flavonoid IFR low borderline
Atha02G0038200.1 Flavonoid IFR low borderline
Atha02G0042650.1 Flavonoid IFR low borderline
Atha02G0042650.2 Flavonoid IFR low borderline
Atha03G0019680.1 Flavonoid IFR low borderline
Atha03G0044150.2 Flavonoid IFR low borderline
Atha03G0044150.3 Flavonoid IFR low borderline
Atha03G0044150.4 Flavonoid IFR low borderline
Atha03G0045980.1 Flavonoid IFR low borderline
Atha03G0045980.2 Flavonoid IFR low borderline
Atha03G0045990.1 Flavonoid IFR low borderline
Atha03G0053850.1 Flavonoid IFR low borderline
Atha03G0053850.2 Flavonoid IFR low borderline
Atha04G0000700.1 Flavonoid IFR low borderline
Atha04G0000700.2 Flavonoid IFR low borderline
Atha04G0000700.3 Flavonoid IFR low borderline
Atha04G0000700.4 Flavonoid IFR low borderline
Atha04G0007710.1 Flavonoid IFR low borderline
Atha04G0008300.1 Flavonoid IFR low borderline
Atha04G0012260.1 Flavonoid IFR high pass
Atha04G0012260.2 Flavonoid IFR high pass
Atha04G0018490.1 Flavonoid IFR low borderline
Atha04G0018490.2 Flavonoid IFR low borderline
Atha04G0024170.1 Flavonoid IFR low borderline
Atha04G0031300.1 Flavonoid IFR low borderline
Atha04G0032500.1 Flavonoid IFR low borderline
Atha04G0032500.2 Flavonoid IFR low borderline
Atha04G0035850.1 Flavonoid IFR high pass
Atha04G0036590.1 Flavonoid IFR medium pass
Atha04G0040820.1 Flavonoid IFR high pass
Atha05G0001330.1 Flavonoid IFR low borderline
Atha05G0010040.1 Flavonoid IFR low borderline
Atha05G0013790.1 Flavonoid IFR low borderline
Atha05G0013790.2 Flavonoid IFR low borderline