PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: IFS
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Gene Pathway Family Confidence Status
Atha04G0038840.1 Flavonoid IFS medium borderline
Atha04G0038870.1 Flavonoid IFS medium borderline
Atha04G0038890.1 Flavonoid IFS medium borderline
Atha04G0038910.1 Flavonoid IFS medium borderline
Atha04G0041050.1 Flavonoid IFS low borderline
Atha04G0041060.1 Flavonoid IFS low borderline
Atha04G0041070.1 Flavonoid IFS low borderline
Atha04G0041070.2 Flavonoid IFS low borderline
Atha05G0003590.1 Flavonoid IFS medium borderline
Atha05G0005070.1 Flavonoid IFS low borderline
Atha05G0005070.2 Flavonoid IFS low borderline
Atha05G0005070.3 Flavonoid IFS low borderline
Atha05G0006360.1 Flavonoid IFS medium borderline
Atha05G0007510.1 Flavonoid IFS medium borderline
Atha05G0007780.1 Flavonoid IFS low borderline
Atha05G0007780.2 Flavonoid IFS low borderline
Atha05G0013480.3 Flavonoid IFS low borderline
Atha05G0022160.1 Flavonoid IFS low borderline
Atha05G0024010.2 Flavonoid IFS low borderline
Atha05G0024220.1 Flavonoid IFS medium borderline
Atha05G0024230.1 Flavonoid IFS medium borderline
Atha05G0024240.1 Flavonoid IFS medium borderline
Atha05G0024280.1 Flavonoid IFS medium borderline
Atha05G0029320.1 Flavonoid IFS low borderline
Atha05G0029320.2 Flavonoid IFS low borderline
Atha05G0029340.1 Flavonoid IFS low borderline
Atha05G0029350.1 Flavonoid IFS low borderline
Atha05G0029430.1 Flavonoid IFS medium borderline
Atha05G0029430.2 Flavonoid IFS medium borderline
Atha05G0031670.1 Flavonoid IFS low borderline
Atha05G0031670.2 Flavonoid IFS low borderline
Atha05G0036100.1 Flavonoid IFS medium borderline
Atha05G0038580.1 Flavonoid IFS medium borderline
Atha05G0039340.1 Flavonoid IFS low borderline
Atha05G0039340.2 Flavonoid IFS low borderline
Atha05G0042200.1 Flavonoid IFS medium borderline
Atha05G0046430.1 Flavonoid IFS low borderline
Atha05G0052210.1 Flavonoid IFS medium borderline
Atha05G0052250.1 Flavonoid IFS medium borderline
Atha05G0053970.1 Flavonoid IFS low borderline
Atha05G0062970.1 Flavonoid IFS medium borderline