PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2639
Candidate Protein Records
2149
Pathway-Level Records
5151
Family-Level Calls
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and protein/isoform records for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
  • Download candidate protein FASTA for this species
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Pathway-Level Records Detected Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Detected families Assignment calls Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public protein/isoform identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: POD
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Protein/Isoform Record Pathway Family Confidence Status
Atha05G0005720.2 Phenylpropanoid POD low borderline
Atha05G0006160.1 Phenylpropanoid POD medium pass
Atha05G0006170.1 Phenylpropanoid POD medium pass
Atha05G0010580.1 Phenylpropanoid POD medium pass
Atha05G0013190.1 Phenylpropanoid POD medium pass
Atha05G0013190.2 Phenylpropanoid POD medium pass
Atha05G0014280.1 Phenylpropanoid POD medium pass
Atha05G0017090.1 Phenylpropanoid POD medium pass
Atha05G0017090.2 Phenylpropanoid POD medium pass
Atha05G0018870.1 Phenylpropanoid POD low borderline
Atha05G0018870.2 Phenylpropanoid POD low borderline
Atha05G0019400.1 Phenylpropanoid POD medium pass
Atha05G0019410.1 Phenylpropanoid POD medium pass
Atha05G0020530.1 Phenylpropanoid POD medium pass
Atha05G0020530.2 Phenylpropanoid POD medium pass
Atha05G0020660.1 Phenylpropanoid POD medium pass
Atha05G0021260.1 Phenylpropanoid POD medium pass
Atha05G0023070.1 Phenylpropanoid POD medium pass
Atha05G0028260.1 Phenylpropanoid POD medium pass
Atha05G0032860.1 Phenylpropanoid POD medium pass
Atha05G0032860.2 Phenylpropanoid POD medium pass
Atha05G0033450.1 Phenylpropanoid POD medium pass
Atha05G0035640.1 Phenylpropanoid POD medium pass
Atha05G0037560.1 Phenylpropanoid POD medium pass
Atha05G0037560.2 Phenylpropanoid POD medium pass
Atha05G0037560.3 Phenylpropanoid POD medium pass
Atha05G0037560.4 Phenylpropanoid POD medium pass
Atha05G0041160.1 Phenylpropanoid POD medium pass
Atha05G0046420.1 Phenylpropanoid POD medium pass
Atha05G0053460.1 Phenylpropanoid POD medium pass
Atha05G0053470.1 Phenylpropanoid POD medium pass
Atha05G0059430.1 Phenylpropanoid POD medium pass
Atha05G0059440.1 Phenylpropanoid POD medium pass
Atha05G0059450.1 Phenylpropanoid POD medium pass
Atha05G0061950.1 Phenylpropanoid POD medium pass
Atha05G0063070.1 Phenylpropanoid POD medium pass