Arabidopsis thaliana (arabidopsis_thaliana)
Imported from atlas release summary for Arabidopsis thaliana.
2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
- This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
- If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
- Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Pathway Coverage
6
Pathways
Family Distribution
2149
Candidate Genes
BAHD
6.17%
C4H
5.9%
C3'H/CYP98A
5.73%
4CL
4.14%
CYP76
3.81%
IFS
3.71%
POD
3.61%
NMT
3.42%
Other Families
63.52%
More Families (95)
T3O
158
3.07%
UFGT
148
2.87%
UGT
144
2.8%
F3H
143
2.78%
DWF4/CYP90B1
139
2.7%
7DLGT
137
2.66%
SMT1/SMT2/SMT3
123
2.39%
SGD
108
2.1%
BR6OX2/CYP85A2
97
1.88%
CAS
96
1.86%
CODM/T6ODM
87
1.69%
F3'H/CYP75B
86
1.67%
STR
82
1.59%
CYP71
78
1.51%
TRI/TRII
74
1.44%
CAD
64
1.24%
T16H
62
1.2%
H6H
56
1.09%
IFR
53
1.03%
CSE
50
0.97%
TPS
50
0.97%
GES
48
0.93%
IO
46
0.89%
FNS
44
0.85%
LAMT
40
0.78%
ANR
39
0.76%
CYP90D1
39
0.76%
LAC
38
0.74%
F5H/CYP84A
37
0.72%
PYKS
35
0.68%
SLS
35
0.68%
CCR
34
0.66%
BBE
33
0.64%
NCS
33
0.64%
COMT
32
0.62%
8HGO
31
0.6%
GS
31
0.6%
RAS
31
0.6%
TAT
31
0.6%
G8O/G8H
28
0.54%
CNMT
28
0.54%
F3'5'H/CYP75A
26
0.5%
CPD/CYP90A1
26
0.5%
HCT
25
0.49%
16OMT
21
0.41%
PMT
21
0.41%
GGPPS
20
0.39%
7DLH
19
0.37%
COR
17
0.33%
ANS/LDOX
17
0.33%
CPR
17
0.33%
BR6OX1/CYP85A1
17
0.33%
CYP51G1
16
0.31%
PAL
15
0.29%
FPPS
15
0.29%
AACT
14
0.27%
DFR
13
0.25%
CCoAOMT
13
0.25%
CYP719
12
0.23%
SQE
12
0.23%
MPO
11
0.21%
TYDC_DDC
11
0.21%
SMO1/SMO2
11
0.21%
MVK
11
0.21%
ROT3/CYP90C1
10
0.19%
DXS
10
0.19%
SQS/FDFT1
9
0.17%
CHI
8
0.16%
DET2
7
0.14%
MCT/IspD
7
0.14%
ISY
6
0.12%
DWF7
6
0.12%
MVD
6
0.12%
CYP80F1
5
0.1%
CHS
5
0.1%
FLS
5
0.1%
HPPR
5
0.1%
CMK/IspE
5
0.1%
HDS/IspG
5
0.1%
XMT_MXMT_DXMT
4
0.08%
CYP80B1
4
0.08%
HYD1
4
0.08%
DWF1
4
0.08%
FK
4
0.08%
ADC
3
0.06%
CPI1
3
0.06%
IDI
3
0.06%
HMGS
3
0.06%
TDC
2
0.04%
DWF5
2
0.04%
PMK
2
0.04%
MDS/IspF
2
0.04%
HMGR
2
0.04%
DXR
2
0.04%
HDR/IspH
1
0.02%
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
| Pathway | Candidate Genes | Families | Top family | Results |
|---|---|---|---|---|
| Terpenoid pathway | 623 | 19 | BAHD (275) | View species results |
| Alkaloid pathway | 545 | 22 | NMT (110) | View species results |
| Phenylpropanoid pathway | 395 | 11 | POD (174) | View species results |
| Flavonoid pathway | 216 | 11 | UFGT (133) | View species results |
| Steroid pathway | 216 | 12 | SMT1/SMT2/SMT3 (88) | View species results |
| Rosmarinic acid pathway | 154 | 7 | C4H (58) | View species results |
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
| Catalytic group | Families | Candidate genes | Included families |
|---|---|---|---|
| P450/oxygenase | 24 | 1926 | 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O |
| BAHD/acyltransferase | 3 | 374 | BAHD, HCT, RAS |
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: SGD
| Gene | Pathway | Family | Confidence | Status |
|---|---|---|---|---|
| Atha02G0039340.4 | Alkaloid | SGD | medium | pass |
| Atha02G0039340.5 | Alkaloid | SGD | medium | pass |
| Atha02G0039350.1 | Alkaloid | SGD | medium | pass |
| Atha03G0003020.1 | Alkaloid | SGD | medium | pass |
| Atha03G0006340.1 | Alkaloid | SGD | low | borderline |
| Atha03G0006340.2 | Alkaloid | SGD | low | borderline |
| Atha03G0008850.1 | Alkaloid | SGD | medium | pass |
| Atha03G0018740.1 | Alkaloid | SGD | medium | pass |
| Atha03G0018740.2 | Alkaloid | SGD | medium | pass |
| Atha03G0018740.3 | Alkaloid | SGD | medium | pass |
| Atha03G0018740.4 | Alkaloid | SGD | medium | pass |
| Atha03G0018740.5 | Alkaloid | SGD | medium | pass |
| Atha03G0018740.6 | Alkaloid | SGD | medium | pass |
| Atha03G0018740.7 | Alkaloid | SGD | medium | pass |
| Atha03G0018750.1 | Alkaloid | SGD | medium | pass |
| Atha03G0022430.1 | Alkaloid | SGD | medium | pass |
| Atha03G0050980.1 | Alkaloid | SGD | medium | pass |
| Atha03G0050990.1 | Alkaloid | SGD | medium | pass |
| Atha03G0050990.2 | Alkaloid | SGD | medium | pass |
| Atha03G0050990.3 | Alkaloid | SGD | medium | pass |
| Atha03G0051000.1 | Alkaloid | SGD | medium | pass |
| Atha03G0051000.2 | Alkaloid | SGD | medium | pass |
| Atha03G0053760.1 | Alkaloid | SGD | medium | pass |
| Atha03G0053760.2 | Alkaloid | SGD | medium | pass |
| Atha03G0053770.1 | Alkaloid | SGD | medium | pass |
| Atha03G0053770.2 | Alkaloid | SGD | medium | pass |
| Atha03G0053770.3 | Alkaloid | SGD | medium | pass |
| Atha03G0053770.4 | Alkaloid | SGD | medium | pass |
| Atha03G0053770.5 | Alkaloid | SGD | medium | pass |
| Atha03G0053770.6 | Alkaloid | SGD | medium | pass |
| Atha03G0053770.7 | Alkaloid | SGD | medium | pass |
| Atha03G0053770.8 | Alkaloid | SGD | medium | pass |
| Atha04G0021710.1 | Alkaloid | SGD | medium | pass |
| Atha04G0021710.2 | Alkaloid | SGD | medium | pass |
| Atha04G0022090.1 | Alkaloid | SGD | medium | pass |
| Atha04G0028410.1 | Alkaloid | SGD | medium | pass |
| Atha04G0028410.2 | Alkaloid | SGD | medium | pass |
| Atha04G0028410.3 | Alkaloid | SGD | medium | pass |
| Atha04G0028420.1 | Alkaloid | SGD | medium | pass |
| Atha04G0028420.2 | Alkaloid | SGD | medium | pass |
| Atha05G0015790.1 | Alkaloid | SGD | medium | pass |
| Atha05G0023640.1 | Alkaloid | SGD | medium | pass |
| Atha05G0023640.2 | Alkaloid | SGD | medium | pass |
| Atha05G0023650.1 | Alkaloid | SGD | medium | pass |
| Atha05G0025070.1 | Alkaloid | SGD | medium | pass |
| Atha05G0025070.2 | Alkaloid | SGD | medium | pass |
| Atha05G0025070.3 | Alkaloid | SGD | medium | pass |
| Atha05G0025100.1 | Alkaloid | SGD | medium | pass |
| Atha05G0025100.2 | Alkaloid | SGD | medium | pass |
| Atha05G0027460.1 | Alkaloid | SGD | medium | pass |