PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current family filter: T3O
Reset
Gene Pathway Family Confidence Status
Atha04G0014450.3 Alkaloid T3O low borderline
Atha04G0014460.1 Alkaloid T3O medium pass
Atha04G0014460.2 Alkaloid T3O low borderline
Atha04G0014460.3 Alkaloid T3O medium pass
Atha04G0014460.4 Alkaloid T3O low borderline
Atha04G0019010.1 Alkaloid T3O medium pass
Atha04G0019010.2 Alkaloid T3O medium pass
Atha04G0032960.1 Alkaloid T3O medium borderline
Atha04G0032970.1 Alkaloid T3O medium borderline
Atha04G0032990.1 Alkaloid T3O medium borderline
Atha04G0033210.1 Alkaloid T3O medium pass
Atha04G0037660.1 Alkaloid T3O medium borderline
Atha04G0037770.1 Alkaloid T3O medium pass
Atha04G0038790.1 Alkaloid T3O medium borderline
Atha04G0038800.1 Alkaloid T3O medium borderline
Atha04G0038830.1 Alkaloid T3O medium borderline
Atha04G0038840.1 Alkaloid T3O medium borderline
Atha04G0038870.1 Alkaloid T3O medium borderline
Atha04G0038910.1 Alkaloid T3O medium borderline
Atha05G0003590.1 Alkaloid T3O medium borderline
Atha05G0005070.1 Alkaloid T3O medium pass
Atha05G0005070.3 Alkaloid T3O medium pass
Atha05G0007510.1 Alkaloid T3O medium borderline
Atha05G0007780.1 Alkaloid T3O low borderline
Atha05G0007780.2 Alkaloid T3O low borderline
Atha05G0009220.1 Alkaloid T3O medium borderline
Atha05G0013480.1 Alkaloid T3O low borderline
Atha05G0013480.2 Alkaloid T3O low borderline
Atha05G0013480.4 Alkaloid T3O low borderline
Atha05G0022160.1 Alkaloid T3O medium pass
Atha05G0024010.1 Alkaloid T3O medium pass
Atha05G0024050.1 Alkaloid T3O medium borderline
Atha05G0024220.1 Alkaloid T3O medium borderline
Atha05G0024230.1 Alkaloid T3O medium borderline
Atha05G0024240.1 Alkaloid T3O medium borderline
Atha05G0024280.1 Alkaloid T3O medium borderline
Atha05G0028970.1 Alkaloid T3O medium borderline
Atha05G0029430.1 Alkaloid T3O medium borderline
Atha05G0029430.2 Alkaloid T3O medium borderline
Atha05G0032230.1 Alkaloid T3O medium pass
Atha05G0032230.3 Alkaloid T3O medium pass
Atha05G0032230.4 Alkaloid T3O medium pass
Atha05G0036180.1 Alkaloid T3O low borderline
Atha05G0038580.1 Alkaloid T3O medium borderline
Atha05G0039340.1 Alkaloid T3O medium pass
Atha05G0039340.2 Alkaloid T3O medium pass
Atha05G0042200.1 Alkaloid T3O medium borderline
Atha05G0042210.1 Alkaloid T3O medium pass
Atha05G0042210.2 Alkaloid T3O medium pass
Atha05G0042210.3 Alkaloid T3O medium pass