PlantSME Plant secondary metabolism enzyme database

Arabidopsis thaliana (arabidopsis_thaliana)

Imported from atlas release summary for Arabidopsis thaliana.

2149
Candidate Genes
103
Families
6
Pathways
Phylogenetic Position
The current species is positioned within the lineage framework used by this site. Its taxon group is highlighted below.
Species Metadata
Taxon group
Eudicots
Genome status
Genome-level resource available
Site Placement
  • This page summarizes pathway coverage, family distributions, and the gene list for the species within the current public dataset.
  • If you want to start from the public overview first, open the homepage and then return here for species-level drill-down.
  • Family statistics correspond to enzyme families, while pathway statistics correspond to the real category-level pathways.
Family Distribution
More Families (95)
Species Pathway Results
The links below show identification results for this species within each pathway, instead of opening the global pathway overview.
Pathway Candidate Genes Families Top family Results
Terpenoid pathway 623 19 BAHD (275) View species results
Alkaloid pathway 545 22 NMT (110) View species results
Phenylpropanoid pathway 395 11 POD (174) View species results
Flavonoid pathway 216 11 UFGT (133) View species results
Steroid pathway 216 12 SMT1/SMT2/SMT3 (88) View species results
Rosmarinic acid pathway 154 7 C4H (58) View species results
Broad Catalytic Groups
P450/oxygenase and BAHD/acyltransferase are counted separately as broad catalytic groups and are not mixed into the canonical enzyme-family count.
Catalytic group Families Candidate genes Included families
P450/oxygenase 24 1926 7DLH, BR6OX1/CYP85A1, BR6OX2/CYP85A2, C3'H/CYP98A, C4H, CPD/CYP90A1, CYP51G1, CYP71, CYP719, CYP76, CYP80B1, CYP80F1, CYP90D1, DWF4/CYP90B1, F3'5'H/CYP75A, F3'H/CYP75B, F5H/CYP84A, G8O/G8H, IFS, IO, ROT3/CYP90C1, SLS, T16H, T3O
BAHD/acyltransferase 3 374 BAHD, HCT, RAS
Identification Result List
Search the public identification results for this species; click pathway or family legends above to narrow within this species.
Current pathway filter: Terpenoid pathway
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Gene Pathway Family Confidence Status
Atha01G0003910.1 Terpenoid AACT medium borderline
Atha02G0003600.1 Terpenoid AACT low borderline
Atha02G0027060.1 Terpenoid AACT medium borderline
Atha05G0041930.1 Terpenoid AACT medium borderline
Atha05G0041930.2 Terpenoid AACT medium borderline
Atha05G0041930.3 Terpenoid AACT medium borderline
Atha05G0041930.4 Terpenoid AACT medium borderline
Atha05G0041930.5 Terpenoid AACT medium borderline
Atha05G0042450.1 Terpenoid AACT medium borderline
Atha05G0042450.2 Terpenoid AACT medium borderline
Atha05G0043210.1 Terpenoid AACT medium borderline
Atha05G0043210.2 Terpenoid AACT medium borderline
Atha05G0043210.3 Terpenoid AACT medium borderline
Atha05G0043210.4 Terpenoid AACT medium borderline
Atha01G0000640.1 Terpenoid BAHD medium pass
Atha01G0001460.1 Terpenoid BAHD medium pass
Atha01G0002560.1 Terpenoid BAHD medium pass
Atha01G0002670.1 Terpenoid BAHD medium pass
Atha01G0003090.1 Terpenoid BAHD medium pass
Atha01G0003170.1 Terpenoid BAHD medium pass
Atha01G0005920.1 Terpenoid BAHD medium pass
Atha01G0010870.1 Terpenoid BAHD medium pass
Atha01G0010870.2 Terpenoid BAHD medium pass
Atha01G0012600.1 Terpenoid BAHD medium pass
Atha01G0015150.1 Terpenoid BAHD low borderline
Atha01G0024940.1 Terpenoid BAHD medium pass
Atha01G0024940.2 Terpenoid BAHD medium pass
Atha01G0024950.1 Terpenoid BAHD medium pass
Atha01G0027420.1 Terpenoid BAHD low borderline
Atha01G0027580.1 Terpenoid BAHD medium pass
Atha01G0028050.1 Terpenoid BAHD low borderline
Atha01G0028050.2 Terpenoid BAHD low borderline
Atha01G0028690.1 Terpenoid BAHD medium pass
Atha01G0028690.2 Terpenoid BAHD medium pass
Atha01G0031400.1 Terpenoid BAHD medium pass
Atha01G0032080.1 Terpenoid BAHD medium pass
Atha01G0032080.2 Terpenoid BAHD medium pass
Atha01G0032770.1 Terpenoid BAHD medium pass
Atha01G0033320.1 Terpenoid BAHD medium pass
Atha01G0033320.2 Terpenoid BAHD medium pass
Atha01G0034250.1 Terpenoid BAHD medium pass
Atha01G0034260.1 Terpenoid BAHD medium pass
Atha01G0034280.1 Terpenoid BAHD medium pass
Atha01G0036650.1 Terpenoid BAHD medium pass
Atha01G0038910.1 Terpenoid BAHD medium pass
Atha01G0041830.1 Terpenoid BAHD medium pass
Atha01G0045140.1 Terpenoid BAHD low borderline
Atha01G0045140.2 Terpenoid BAHD low borderline
Atha01G0050680.1 Terpenoid BAHD medium pass
Atha01G0052720.1 Terpenoid BAHD medium pass